Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Hail | 905 | 17 | 3 months ago | 146 | October 30, 2023 | 211 | mit | Python | ||
Cloud-native genomic dataframes and batch computing | ||||||||||
Htslib | 762 | 1 | a month ago | 11 | June 14, 2023 | 160 | other | C | ||
C library for high-throughput sequencing data formats | ||||||||||
Nucleus | 675 | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | ||
Python and C++ code for reading and writing genomics data. | ||||||||||
Bioawk | 518 | 2 years ago | 1 | March 03, 2021 | 22 | C | ||||
BWK awk modified for biological data | ||||||||||
Nanopolish | 496 | 9 months ago | 60 | mit | C++ | |||||
Signal-level algorithms for MinION data | ||||||||||
Snippy | 408 | 6 months ago | 179 | gpl-2.0 | Perl | |||||
:scissors: :zap: Rapid haploid variant calling and core genome alignment | ||||||||||
Cyvcf2 | 345 | 34 | 46 | 3 months ago | 90 | December 11, 2023 | 39 | mit | Cython | |
cython + htslib == fast VCF and BCF processing | ||||||||||
Vcfanno | 334 | 1 | 5 months ago | 41 | November 29, 2022 | 33 | mit | Go | ||
annotate a VCF with other VCFs/BEDs/tabixed files | ||||||||||
Survivor | 299 | 5 months ago | 66 | mit | C++ | |||||
Toolset for SV simulation, comparison and filtering | ||||||||||
Truvari | 284 | 24 days ago | 23 | August 07, 2023 | mit | Python | ||||
Structural variant toolkit for VCFs |