Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for perl bioinformatics
bioinformatics
x
perl
x
69 search results found
Awesome
⭐
565
Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
Snippy
⭐
408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
Bioperl Live
⭐
285
Core BioPerl 1.x code
Intermine
⭐
228
A powerful open source data warehouse system
Roary
⭐
219
Rapid large-scale prokaryote pan genome analysis
Readfq
⭐
105
Fast multi-line FASTA/Q reader in several programming languages
Bio_scripts
⭐
73
Practical, reusable scripts for bioinformatics
Edge
⭐
70
EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
Work_flow_of_population_genetics
⭐
61
整理常用的群体遗传学分析流程和脚本
Bigsdb
⭐
53
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
Raptor
⭐
50
Graph-based mapping of long sequences, noisy or HiFi.
Bioperl6
⭐
49
reimplementation of BioPerl classes in Raku (e.g. the language formerly known as Perl6)
Ensembl Compara
⭐
46
The Ensembl Compara Perl API and SQL schema
Snpsplit
⭐
43
Allele-specific alignment sorting
Craq
⭐
41
Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
Assembly_improvement
⭐
39
Improve the quality of a denovo assembly by scaffolding and gap filling
Datasets Sars Cov 2
⭐
38
Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)
Genome Annotation Pipeline
⭐
36
Genome annotation pipeline
Bioperl Run
⭐
33
BioPerl wrappers
Pgcgap
⭐
29
The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
Bac Genomics Scripts
⭐
28
Collection of scripts for bacterial genomics
Biotoolbox
⭐
27
Tools for querying and analysis of genomic data
Perl For Bioinformatics
⭐
26
An attempt to help anyone interested in using Perl for Bioinformatics
16gt
⭐
26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Panpop
⭐
24
Application of pan-genome for population
Partie
⭐
20
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
Bioinfo
⭐
19
Various bioinformatics tools
Cgview_comparison_tool
⭐
19
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Wgs2ncbi
⭐
18
Toolkit for preparing genomes for submission to NCBI
Bcgtree
⭐
18
Automatically calculate phylogenetic trees from bacterial core genes
Mview
⭐
16
MView extracts and reformats the results of a sequence database search or multiple alignment.
Starfish
⭐
16
starfish: a modular toolkit for giant mobile element annotation
Bio Phylo
⭐
15
Bio::Phylo - Phyloinformatic analysis using Perl
Bio Tradis
⭐
15
A set of tools to analyse the output from TraDIS analyses
Sesbio
⭐
14
Bioinformatics scripts for genome analysis
Mlst_check
⭐
14
Multilocus sequence typing by blast using the schemes from PubMLST
Phastaf
⭐
14
Identify phage regions in bacterial genomes for masking purposes
Wqfm 2020
⭐
13
wQFM implementation in Java
Berokka
⭐
12
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
Hyb
⭐
11
hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
Positive Selection
⭐
10
Scripts and procedures for detecting positively selected genes and codons in primates
Wgddetector
⭐
10
Bioinfo
⭐
10
Bioinformatics modules for Perl6 designed for parallel use.
Fa Nf
⭐
9
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
Hla Polysolver
⭐
9
Fork of the Polysolver project
Tiger
⭐
8
Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes; package also includes orthogonal program Islander
Metacrast
⭐
8
MetaCRAST: reference-guided CRISPR detection in metagenomes
Toxinpred2
⭐
8
An improved method for predicting toxicity of proteins
E Driver
⭐
7
This repository contents a script to run e-Driver as well as the necessary files to reproduce the results presented in the paper describing the algorithm.
Lepwrap
⭐
7
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
Popgen
⭐
7
Small scripts for population genetics analysis
Svpath
⭐
6
An accurate pipeline for predicting the pathogenicity of human exon structural variants
Raku For Bioinformatics
⭐
6
Raku/Perl6 resources for bioinformatics
Pangloss
⭐
6
Pangenome analysis of eukaryotes.
Ebt
⭐
6
Evolutionary Bioinformatics Toolkit (EBT)
Cg Pipeline
⭐
6
Genome assembly/prediction/annotation pipeline for the Linux command line
Bioinformatics Problems Rosalind
⭐
6
💻 Small coding assignments from Rosalind and some day-to-day fun coding and learning activities.
Ensembl Xs
⭐
6
A collection of XS modules to be used with the Ensembl APIs
Nf Repeatmasking
⭐
5
Nextflow workflow for automatic repeat detection, classification and masking
Course Btea
⭐
5
Bioinformatics for Transcriptomic and Epigenomic Analyses
Decontaminer
⭐
5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
Genetic Mapper
⭐
5
SVG Genetic Map Drawer
V Xtractor
⭐
5
Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
Scripts
⭐
5
Bioinformatics projects and code shared by Zhi John Lu
Mirage
⭐
5
Mirage generates multiple sequence alignments of proteoforms by mapping sequences back to their coding regions on the genome and then compressing those mappings into alignments.
Rfam Website
⭐
5
Rfam website source code
Plasmer
⭐
5
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
Ipsa Nf
⭐
5
Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow
Junkimlabtutorial
⭐
5
충남대학교 김준 연구실 튜토리얼
Related Searches
Python Bioinformatics (1,701)
Script Perl (1,375)
Plugin Perl (1,117)
C Perl (688)
Database Perl (597)
Html Perl (591)
Bioinformatics Genomics (541)
Python Perl (515)
Shell Perl (514)
R Bioinformatics (490)
1-69 of 69 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.