Decontaminer

DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articl
Alternatives To Decontaminer
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Deepvariant2,978
4 months ago8bsd-3-clausePython
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Fastp1,602
6 months ago1December 15, 2021309mitC++
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Gatk1,576212 days ago46March 16, 20231,299otherJava
Official code repository for GATK versions 4 and up
Galaxy1,2112232 months ago30December 08, 20232,169otherPython
Data intensive science for everyone.
Fgbio292
2 months ago16May 16, 2023110mitScala
Tools for working with genomic and high throughput sequencing data.
Htsjdk271170873 months ago78October 13, 2023303Java
A Java API for high-throughput sequencing data (HTS) formats.
Sortmerna220
6 days ago42gpl-3.0C++
SortMeRNA: next-generation sequence filtering and alignment tool
Ugene190
2 months ago6gpl-2.0C++
UGENE is free open-source cross-platform bioinformatics software
Afterqc157
6 years ago21mitPython
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Ngstools142
8 months agogpl-3.0R
Programs to analyse NGS data for population genetics purposes
Alternatives To Decontaminer
Select To Compare


Alternative Project Comparisons
Popular Ngs Projects
Popular Sequencing Projects
Popular Science Categories
Related Searches

Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
Perl
Bioinformatics
Sequencing
Virus
Ngs