Assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Biopython | 3,918 |  | 1,465 | 1,373 | 3 months ago | 58 | February 13, 2023 | 545 | other | Python |
| Official git repository for Biopython (originally converted from CVS) | ||||||||||
| Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Minimap2 | 1,613 |  | 8 | 32 | 3 months ago | 27 | December 26, 2021 | 154 | other | C |
| A versatile pairwise aligner for genomic and spliced nucleotide sequences | ||||||||||
| Gatk | 1,576 | 2 | a month ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Bwa | 1,282 | a year ago | 1 | March 03, 2021 | 211 | gpl-3.0 | C | |||
| Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment) | ||||||||||
| Galaxy | 1,211 |  | 2 | 23 | 3 months ago | 30 | December 08, 2023 | 2,169 | other | Python |
| Data intensive science for everyone. | ||||||||||
| Getting Started With Genomics Tools And Resources | 991 | 3 months ago | 1 | Shell | ||||||
| Unix, R and python tools for genomics and data science | ||||||||||
| Adam | 966 | 20 | 17 | 3 months ago | 14 | December 16, 2020 | 35 | apache-2.0 | Scala | |
| ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed. | ||||||||||
| Hail | 905 |  | 17 | 3 months ago | 146 | October 30, 2023 | 211 | mit | Python | |
| Cloud-native genomic dataframes and batch computing | ||||||||||
| Ncbi Genome Download | 784 |  | 2 | 6 | 9 months ago | 25 | July 28, 2023 | 38 | apache-2.0 | Python |
| Scripts to download genomes from the NCBI FTP servers | ||||||||||
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