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The Top 23 Sequence Alignment Open Source Projects

Open source projects categorized as Sequence Alignment
Categories > Science > Sequence Alignment
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58most recent commit 3 months agopypi biopython} Downloads
Minimap2 ⭐ 1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages 32total releases 27most recent commit 3 months agopypi mappy} Downloads
Bwa ⭐ 1,282
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
total releases 1most recent commit a year ago
Diamond ⭐ 900
Accelerated BLAST compatible local sequence aligner.
most recent commit 4 months ago
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Bwa Mem2 ⭐ 645
The next version of bwa-mem
most recent commit 4 months ago
Vsearch ⭐ 605
Versatile open-source tool for microbiome analysis
total releases 1most recent commit 3 months ago
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Seqan ⭐ 444
SeqAn's official repository.
most recent commit 3 months ago
Edlib ⭐ 421
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
dependent packages 35total releases 20most recent commit a year agopypi edlib} Downloads
Seqan3 ⭐ 373
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
most recent commit 3 months ago
Minigraph ⭐ 367
Proof-of-concept seq-to-graph mapper and graph generator
total releases 1most recent commit 4 months ago
Bistring ⭐ 360
Bidirectionally transformed strings
dependent packages 2total releases 3most recent commit 6 months agonpm bistring} Downloads
Sequenceserver ⭐ 259
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
total releases 68most recent commit 3 months ago
Miniprot ⭐ 231
Align proteins to genomes with splicing and frameshift
most recent commit 8 months ago
Msa ⭐ 162
Modular BioJS compoment for a multiple sequence alignment
dependent packages 10total releases 48most recent commit 2 years agonpm msa} Downloads
Ggmsa ⭐ 144
🚥 Visualizing publication-quality multiple sequence alignment using ggplot2
most recent commit 2 years ago
Seqlib ⭐ 131
C++ htslib/bwa-mem/fermi interface for interrogating sequence data
most recent commit 7 months ago
Ksw2 ⭐ 115
Global alignment and alignment extension
most recent commit 10 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Kalign ⭐ 105
A fast multiple sequence alignment program.
total releases 1most recent commit 5 months ago
Abpoa ⭐ 99
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
total releases 28most recent commit 3 months ago
Plmc ⭐ 83
Inference of couplings in proteins and RNAs from sequence variation
most recent commit a year ago
The 10 Most Depended On Sequence Alignment Open Source Projects
Biopython ⭐ 3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months agopypi biopython} Downloads
Edlib ⭐ 421
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.
dependent packages 35total releases 20latest release August 20, 2021most recent commit a year agopypi edlib} Downloads
Minimap2 ⭐ 1,613
A versatile pairwise aligner for genomic and spliced nucleotide sequences
dependent packages 32total releases 27latest release December 26, 2021most recent commit 3 months agopypi mappy} Downloads
Msa ⭐ 162
Modular BioJS compoment for a multiple sequence alignment
dependent packages 10total releases 48latest release July 17, 2016most recent commit 2 years agonpm msa} Downloads
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Lexicon Mono Seq ⭐ 13
DOM Text Based Multiple Sequence Alignment Library
dependent packages 2total releases 26latest release June 30, 2019most recent commit 5 years agonpm lexicon-mono-seq} Downloads
Bistring ⭐ 360
Bidirectionally transformed strings
dependent packages 2total releases 3latest release March 14, 2022most recent commit 6 months agonpm bistring} Downloads
Seqalign ⭐ 14
Collection of sequence alignment algorithms.
dependent packages 1total releases 5latest release January 14, 2022most recent commit 2 years agonpm seqalign} Downloads
The 10 Latest Releases In Sequence Alignment Open Source Projects
Sigalign ⭐ 10
A Similarity-Guided Alignment Algorithm
total releases 7latest release November 10, 2023most recent commit 4 months ago
Clipkit ⭐ 44
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
total releases 34latest release October 02, 2023most recent commit 5 months ago
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Minimap2 Rs ⭐ 46
Rust bindings to minimap2 library
dependent packages 1total releases 15latest release September 12, 2023most recent commit 5 months agocargo minimap2-sys} Downloads
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Mdciao ⭐ 26
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
total releases 10latest release August 08, 2023most recent commit 3 months ago
Minigraph ⭐ 367
Proof-of-concept seq-to-graph mapper and graph generator
total releases 1latest release June 21, 2023most recent commit 4 months ago
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