Awesome Open Source

Programming Languages

Search results for protein fasta

63 search results found

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

Biotite ⭐ 515

A comprehensive library for computational molecular biology

Pyfaidx ⭐ 427

Efficient pythonic random access to fasta subsequences

⚡ ♒ Rapid prokaryotic genome annotation

Interproscan ⭐ 259

a JavaScript DNA, RNA, and protein sequence viewer

Das_tool ⭐ 124

Git repository for FASTA36 sequence comparison software

Sequence_manipulation_suite ⭐ 45

A collection of simple JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. The Sequence Manipulation Suite is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.

Prothint ⭐ 45

Protein hint generation pipeline for gene finding in eukaryotic genomes

Fluentdna ⭐ 43

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

ProFET: Protein Feature Engineering Toolkit for Machine Learning

Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences

Fast and flexible ORF finder

Recognizer ⭐ 24

A tool for domain based annotation with databases from the Conserved Domains Database

Metasanity ⭐ 24

Pipeline for major biological analyses.

UniProt Id Mapping through API

Taxonomer_0.5 ⭐ 21

full taxonomer cython repository

Swiftortho ⭐ 21

A high performance tool to identify orthologs and paralogs across genomes.

Deepdist ⭐ 19

Deep learning prediction of protein residue-residue distances

Shortbred ⭐ 19

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

Hivtrace ⭐ 19

Core Genome Alignment ⭐ 16

Scripts to analyze gene content and make a concatenated alignment of core genes from bacterial genomes.

Predict_property ⭐ 16

Predict protein local properties using sequence or profile information.

Protein orthologous group assignment with deep learning

antimicrobial peptide prediction in R

Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014

Dna2proteins ⭐ 15

A Python script to translate DNA sequences to protein sequences

Pantools ⭐ 15

Multiphate ⭐ 14

Throughput PhATE processing of draft or finished phage genomes

Deepcrystal ⭐ 14

DeepCrystal: A Deep Learning Framework for sequence-based Protein Crystallization Prediction

A tool to infer species tree and phylogenetic network from multilocus data

DeepSig - Predictor of signal peptides in proteins based on deep learning

Genodup Pipeline ⭐ 11

This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.

Sequence Database Curator ⭐ 10

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

Microbialgenomicsscripts ⭐ 10

A selection of short scripts for analyzing microbial genomes

Protein Feature Extraction ⭐ 10

Python code to extract features from Protein sequences for Machine Learning/Deep Learning

R package for microbial pangenomics

Deep learning based prediction of pi-helices in protein sequences

covid19 exploration

Generates consistent PSSM and/or PDB files for protein-protein complexes

Predicting ncRNA-protein interaction using high-level features based on deep learning

Multiphate2 ⭐ 8

multiPhATE with comparative genomics

Supermatrix ⭐ 8

scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

Thermoprot ⭐ 7

Predict protein thermostability with ML

Smiles Neural Network ⭐ 7

A neural network for predicting properties of molecules based on their SMILES representation

Phylogenomics Tools ⭐ 6

Scripts for automating tasks in phylogenetics with microbial genomes

Lcms Spectator ⭐ 6

LCMS raw data and MS-GF+ results viewer

Tgt_package ⭐ 6

Generate A3M and TGT file from a given sequence in FASTA format.

Biodownloader ⭐ 6

📦 A Command Line Tool for downloading protein structures, sequences and MSAs

Ncbi_tools ⭐ 6

Fasta_utilities ⭐ 6

Utilities for downloading and managing protein FASTA files.

LAVA: Longitudinal Analysis of Viral Alleles

Ud Bioinformatics Club ⭐ 5

University of Dallas Bioinformatics Club

Llama Magic ⭐ 5

Covid Bioinformatics ⭐ 5

Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

Protein Coverage Summarizer ⭐ 5

Computes the percent of the residues in each protein sequence that have been identified, based on a list of identified peptides. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results.

Protgraph ⭐ 5

ProtGraph - A Graph-Generator for Proteins

Distributed Protein Sequence Aligner

Utilities and protocols for bioinformatics

Related Searches

Python Protein (1,344)

Python Fasta (749)

Genome Fasta (363)

Jupyter Notebook Protein (296)

Protein Pdb (285)

Bioinformatics Protein (282)

R Protein (245)

Fasta Fastq (233)

Bioinformatics Fasta (223)

Perl Fasta (219)

1-63 of 63 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.