Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Picard | 914 | 17 | 12 | 2 months ago | 176 | November 14, 2023 | 224 | mit | Java | |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. | ||||||||||
Truvari | 278 | a month ago | 23 | August 07, 2023 | mit | Python | ||||
Structural variant toolkit for VCFs | ||||||||||
Htsjdk | 271 | 170 | 87 | 3 months ago | 78 | October 13, 2023 | 303 | Java | ||
A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
Genomics | 154 | 2 years ago | 2 | R | ||||||
A collection of scripts and notes related to genomics and bioinformatics | ||||||||||
Ngscheckmate | 106 | 7 months ago | 24 | mit | Python | |||||
Software program for checking sample matching for NGS data | ||||||||||
Parliament2 | 83 | 3 years ago | 30 | apache-2.0 | Python | |||||
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data | ||||||||||
Neat Genreads | 72 | 2 years ago | 25 | other | Python | |||||
NEAT read simulation tools | ||||||||||
Opengene.jl | 61 | 2 years ago | 8 | other | Julia | |||||
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia | ||||||||||
Sv Plaudit | 47 | 2 years ago | 7 | mit | Shell | |||||
Pipeline for structural variant image curation and analysis. | ||||||||||
Snpsplit | 43 | a year ago | 2 | gpl-3.0 | Perl | |||||
Allele-specific alignment sorting |