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Search results for vcf snps
snps
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vcf
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11 search results found
Snippy
⭐
408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
Pygeno
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242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Vcf2phylip
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216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Snps
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82
tools for reading, writing, merging, and remapping SNPs
16gt
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26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Gssplayground
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21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Proxysnps
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21
🔖 Get SNP proxies from the 1000 Genomes Project.
Vargeno
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15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Vsnp
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13
vSNP -- validate SNPs
Radseq
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12
Collection of Python scripts for parsing/analyses of RAD-seq data
Snpmatch
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9
A simple python library to identify the most likely strain from the population
Vizsnp St
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5
Visualizing the effect of SNPs on protein structure using iCn3D
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