Gssplayground
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Awesome Genome Visualization | 663 | 3 months ago | 7 | TypeScript | ||||||
| A list of interesting genome browser or genome-browser-like implementations | ||||||||||
| Quast | 327 | 7 months ago | 72 | other | AMPL | |||||
| Genome assembly evaluation tool | ||||||||||
| Pycircos | 277 |  | 2 | 4 months ago | 3 | April 09, 2022 | 8 | gpl-3.0 | Python | |
| python Circos | ||||||||||
| Ideogram | 265 |  | 5 | 8 | 3 months ago | 76 | September 05, 2023 | 32 | other | JavaScript |
| Chromosome visualization for the web | ||||||||||
| Ribbon | 249 | a year ago | mit | JavaScript | ||||||
| A genome browser that shows long reads and complex variants better | ||||||||||
| Genvisr | 188 | a year ago | 60 | cc0-1.0 | R | |||||
| Genome data visualizations | ||||||||||
| Methylkit | 176 | 3 months ago | 60 | R | ||||||
| R package for DNA methylation analysis | ||||||||||
| Ngb | 151 | 3 months ago | 290 | mit | Java | |||||
| New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support | ||||||||||
| Mcscanx | 135 | a year ago | 39 | CAP CDS | ||||||
| MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world! | ||||||||||
| Sigminer | 119 | 4 months ago | 32 | August 21, 2023 | 3 | other | R | |||
| 🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html | ||||||||||
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