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Search results for snps
snps
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65 search results found
Snippy
⭐
408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
Pygeno
⭐
242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Vcf2phylip
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216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
Strelka
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204
Strelka2 germline and somatic small variant caller
Icn3d
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135
web-based protein structure viewer and analysis tool interactively or in batch mode
Lineage
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114
tools for genetic genealogy and the analysis of consumer DNA test results
Impute Me
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92
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
Snprelate
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90
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
Osgenome
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90
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
Snps
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82
tools for reading, writing, merging, and remapping SNPs
Gwasrapidd
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78
gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
Arv
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75
A fast 23andMe DNA parser and inferrer for Python
Dna Traits
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64
A fast 23andMe genome text file parser, now superseded by arv
Magma_celltyping
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50
Find causal cell-types underlying complex trait genetics
Rsnps
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47
Wrapper to a number of SNP web APIs
Snparrays.jl
⭐
41
Compressed storage for SNP data
Seqarray
⭐
41
Data management of large-scale whole-genome sequence variant calls (Development version only)
Popgen.jl
⭐
38
Population Genetics in Julia
Multiarchuefipkg
⭐
34
Multi-Architecture UEFI Environment Driver
Geneticvariation.jl
⭐
33
Datastructures and algorithms for working with genetic variation
Panseq
⭐
31
Pan-genomic sequence analysis
Genetic Trait Detector
⭐
30
This python script detects known traits in raw human genetic data.
Pairsnp
⭐
29
A set of scripts for calculating pairwise SNP distance
16gt
⭐
26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Fastman
⭐
25
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
Hibag
⭐
23
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
Stratag
⭐
22
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Sequoia
⭐
22
R package for pedigree inference based on SNP data
Gssplayground
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21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Proxysnps
⭐
21
🔖 Get SNP proxies from the 1000 Genomes Project.
Candihap
⭐
20
A haplotype analysis toolkit for natural variation study.
Mycosnp Nf
⭐
20
CDCgov/mycosnp-nf
Phat
⭐
17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Snpbinner
⭐
17
SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.
Mutation Simulator
⭐
16
A tool for simulating random mutations in any genome
Vargeno
⭐
15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Hess
⭐
15
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
Vsnp
⭐
13
vSNP -- validate SNPs
Gwastools
⭐
13
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
Radseq
⭐
12
Collection of Python scripts for parsing/analyses of RAD-seq data
Bnasnpdb
⭐
12
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
Maizesnpdb
⭐
11
A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines
Psdm
⭐
10
Compute a pairwise SNP distance matrix from one or two alignment(s)
Bioinformatics
⭐
10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Virheat
⭐
9
Visualize microbial evolution at the SNP level!
Snpmatch
⭐
9
A simple python library to identify the most likely strain from the population
Locusexplorer
⭐
8
An interactive graphical illustration of genetic associations and their biological context
Piranha
⭐
8
Scripts for file processing and analysis in phylogenetics and phylogeography
Phenotype
⭐
8
An Open Source Web Application for Genetic Data (SNPs) Data Crawling
Snvcallingworkflow
⭐
7
The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow
Pecaller
⭐
7
map and call next generation genomic sequencing
Snipsa
⭐
7
Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.
River
⭐
7
R package for RIVER (RNA-Informed Variant Effect on Regulation)
Brick
⭐
6
BRICK (https://brick.ink) creates BRIG-like interactive visualisations for bacterial genome annotations and comparisons 🦠
Snplentiful
⭐
6
SNP abundance correlates with network degree
Quack
⭐
6
Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)
Impute
⭐
6
Automated imputation pipeline for arbitrary dataset and reference panels.
Pstrain
⭐
6
An Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data.
Fungal Wdl
⭐
5
Broad fungal method repository
Vizsnp St
⭐
5
Visualizing the effect of SNPs on protein structure using iCn3D
Rdna Nexus
⭐
5
Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench
Clusterduck
⭐
5
Disease Clustering from Literature Based on Minimal Training Data
Psbvb
⭐
5
Manual
Genotype Collector And Snp Dataset Creator
⭐
5
Collecting Genotypes from ENA and make their SNPs
Simple
⭐
5
1-65 of 65 search results
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