Psdm
Compute a pairwise SNP distance matrix from one or two alignment(s)
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Sigprofilerextractor | 132 |  | 3 | 5 months ago | 50 | November 21, 2023 | 1 | bsd-2-clause | Python | |
| SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting. | ||||||||||
| Nmf | 94 | 57 | 25 | 3 years ago | 31 | March 20, 2023 | 96 | R | ||
| NMF: A Flexible R package for Nonnegative Matrix Factorization | ||||||||||
| Neodti | 54 | 3 years ago | apache-2.0 | Python | ||||||
| NeoDTI: Neural integration of neighbor information from a heterogeneous network for discovering new drug-target interactions | ||||||||||
| Cogaps | 53 | 3 months ago | 22 | bsd-3-clause | C++ | |||||
| Bayesian MCMC matrix factorization algorithm | ||||||||||
| Stratipy | 29 | 4 years ago | 3 | other | Jupyter Notebook | |||||
| Graph regularized nonnegative matrix factorization (GNMF) in Python | ||||||||||
| Ngstools | 23 | 5 years ago | 1 | mit | Python | |||||
| My own tools code for NGS data analysis (Next Generation Sequencing) | ||||||||||
| Gedfn | 19 | 5 years ago | mit | Python | ||||||
| GEDFN: Graph-Embedded Deep Feedforward Network | ||||||||||
| Helmsman | 19 | 3 years ago | 3 | mit | Python | |||||
| highly-efficient & lightweight mutation signature matrix aggregation | ||||||||||
| Nimcgcn | 17 | a year ago | 2 | Python | ||||||
| Cbioinfcpp 0 | 12 | 4 months ago | 1 | C++ | ||||||
| The lib CBioInfCpp.h contains 3 groups of functions for C++: "Input-Output", "Working with strings", "Working with graphs". Data structures "Adjacency vector" and "Adjacency map" are implemented in the last one (i.e. in "Working with graphs"). See About_CBioInfCpp for details. | ||||||||||
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