Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Hh Suite | 429 | a year ago | 143 | gpl-3.0 | C | |||||
Remote protein homology detection suite. | ||||||||||
Spoa | 135 | 5 months ago | 11 | mit | C++ | |||||
SIMD partial order alignment tool/library | ||||||||||
Pyrodigal | 111 | 14 | 3 months ago | 60 | November 27, 2023 | 6 | gpl-3.0 | Cython | ||
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! | ||||||||||
Block Aligner | 111 | 8 months ago | 10 | August 05, 2023 | 7 | mit | Jupyter Notebook | |||
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm. | ||||||||||
Snprelate | 90 | 4 months ago | 40 | C++ | ||||||
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only) | ||||||||||
Cute Nucleotides | 53 | 3 years ago | mit | Rust | ||||||
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust. | ||||||||||
Lightmotif | 28 | 3 | 5 months ago | 7 | August 31, 2023 | mit | Rust | |||
A lightweight platform-accelerated library for biological motif scanning using position weight matrices. | ||||||||||
Opal | 24 | 2 years ago | 20 | mit | C++ | |||||
SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global) | ||||||||||
Libdna | 20 | 4 months ago | 5 | mit | C | |||||
♥ Essential Functions for DNA Manipulation | ||||||||||
Pytrimal | 15 | 5 months ago | 16 | July 21, 2023 | 1 | gpl-3.0 | Cython | |||
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD! |