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Search results for python snps

15 search results found

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Vcf2phylip ⭐ 216

Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Lineage ⭐ 114

tools for genetic genealogy and the analysis of consumer DNA test results

Osgenome ⭐ 90

An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies

tools for reading, writing, merging, and remapping SNPs

A fast 23andMe DNA parser and inferrer for Python

Dna Traits ⭐ 64

A fast 23andMe genome text file parser, now superseded by arv

Genetic Trait Detector ⭐ 30

This python script detects known traits in raw human genetic data.

A set of scripts for calculating pairwise SNP distance

Snpbinner ⭐ 17

SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

Mutation Simulator ⭐ 16

A tool for simulating random mutations in any genome

vSNP -- validate SNPs

Collection of Python scripts for parsing/analyses of RAD-seq data

A simple python library to identify the most likely strain from the population

Visualize microbial evolution at the SNP level!

Snvcallingworkflow ⭐ 7

The DKFZ-ODCF, formerly DKFZ/eilslabs SNV-Calling Workflow

Tools for analyzing raw DNA test data files. Shows Y chromosome and mitochondrial mtDNA haplogroups. LGPLv3 - use freely but share improvements.

Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)

Clusterduck ⭐ 5

Disease Clustering from Literature Based on Minimal Training Data

Vizsnp St ⭐ 5

Visualizing the effect of SNPs on protein structure using iCn3D

Genotype Collector And Snp Dataset Creator ⭐ 5

Collecting Genotypes from ENA and make their SNPs

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