Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Vg	1,022			3 months ago			760	other	C++
tools for working with genome variation graphs
Nucleus	675		2	3 years ago	18	August 31, 2021	1	other	C++
Python and C++ code for reading and writing genomics data.
Htsjdk	271	170	87	4 months ago	78	October 13, 2023	303		Java
A Java API for high-throughput sequencing data (HTS) formats.
Genomics	154			2 years ago			2		R
A collection of scripts and notes related to genomics and bioinformatics
Cljam	87			3 months ago	37	May 10, 2019	6	apache-2.0	Clojure
A DNA Sequence Alignment/Map (SAM) library for Clojure
Snps	82	1	2	3 months ago	42	June 06, 2022	23	bsd-3-clause	Python
tools for reading, writing, merging, and remapping SNPs
Strangervisions	35			7 years ago			2	gpl-3.0	Python

Sccaller	28			a year ago			3	agpl-3.0	Python
Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
Germline Dna	23			a year ago			2	mit	wdl
A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
Genomic Data Science	17			9 years ago					HTML
Genomic data science specialization

Alternatives To Germline Dna

Select To Compare

Vg ⭐ 1,022

tools for working with genome variation graphs

most recent commit 3 months ago

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

dependent packages 2total releases 18most recent commit 3 years ago

Htsjdk ⭐ 271

A Java API for high-throughput sequencing data (HTS) formats.

dependent packages 87total releases 78most recent commit 4 months ago

Genomics ⭐ 154

A collection of scripts and notes related to genomics and bioinformatics

most recent commit 2 years ago

Cljam ⭐ 87

A DNA Sequence Alignment/Map (SAM) library for Clojure

total releases 37most recent commit 3 months ago

Snps ⭐ 82

tools for reading, writing, merging, and remapping SNPs

dependent packages 2total releases 42most recent commit 3 months ago

Strangervisions ⭐ 35

most recent commit 7 years ago

Sccaller ⭐ 28

Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data

most recent commit a year ago

Germline Dna ⭐ 23

A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample

most recent commit a year ago

Genomic Data Science ⭐ 17

Genomic data science specialization

most recent commit 9 years ago

Suggest An Alternative To germline-DNA

Alternative Project Comparisons

Germline Dna vs Vg

Germline Dna vs Nucleus

Germline Dna vs Htsjdk

Germline Dna vs Genomics

Germline Dna vs Cljam

Germline Dna vs Snps

Germline Dna vs Strangervisions

Germline Dna vs Sccaller

Germline Dna vs Genomic Data Science

Popular Vcf Projects

Picard ⭐ 914

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

dependent packages 12total releases 176latest release November 14, 2023most recent commit 3 months ago

Hail ⭐ 905

Cloud-native genomic dataframes and batch computing

dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months ago

Htslib ⭐ 762

C library for high-throughput sequencing data formats

dependent packages 1total releases 11latest release June 14, 2023most recent commit a month ago

Bioawk ⭐ 518

BWK awk modified for biological data

total releases 1latest release March 03, 2021most recent commit 2 years ago

Nanopolish ⭐ 496

Signal-level algorithms for MinION data

most recent commit 9 months ago

Popular Dna Projects

Biopython ⭐ 3,918

Official git repository for Biopython (originally converted from CVS)

dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months ago

Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Gatk ⭐ 1,576

Official code repository for GATK versions 4 and up

dependent packages 2total releases 46latest release March 16, 2023most recent commit a month ago

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months ago

Exceldna ⭐ 1,166

Excel-DNA - Free and easy .NET for Excel. This repository contains the core Excel-DNA library.

dependent packages 31total releases 61latest release November 27, 2023most recent commit 3 months ago

Popular Science Categories