Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

Crisp

Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
Stars
19
License
mit
Open Issues
9
Most Recent Commit
9 months ago
Programming Language
C
Categories
Repo
Alternatives To Crisp
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Picard91417124 months ago176November 14, 2023224mitJava
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Truvari284
25 days ago23August 07, 2023mitPython
Structural variant toolkit for VCFs
Htsjdk271170874 months ago78October 13, 2023303Java
A Java API for high-throughput sequencing data (HTS) formats.
Genomics154
2 years ago2R
A collection of scripts and notes related to genomics and bioinformatics
Ngscheckmate106
9 months ago24mitPython
Software program for checking sample matching for NGS data
Parliament283
3 years ago30apache-2.0Python
Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
Neat Genreads72
3 years ago25otherPython
NEAT read simulation tools
Opengene.jl61
2 years ago8otherJulia
(No maintenance) OpenGene, core libraries for NGS data analysis and bioinformatics in Julia
Sv Plaudit47
2 years ago7mitShell
Pipeline for structural variant image curation and analysis.
Snpsplit43
a year ago2gpl-3.0Perl
Allele-specific alignment sorting
Alternatives To Crisp
Select To Compare
Truvari ⭐ 284
Structural variant toolkit for VCFs
total releases 23most recent commit 25 days ago
Htsjdk ⭐ 271
A Java API for high-throughput sequencing data (HTS) formats.
dependent packages 87total releases 78most recent commit 4 months ago


Suggest An Alternative To crisp
Alternative Project Comparisons
Crisp vs Picard
Crisp vs Truvari
Crisp vs Htsjdk
Crisp vs Genomics
Crisp vs Ngscheckmate
Crisp vs Parliament2
Crisp vs Neat Genreads
Crisp vs Opengene.jl
Crisp vs Sv Plaudit
Crisp vs Snpsplit
Popular Sequencing Projects
Popular Vcf Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11latest release June 14, 2023most recent commit a month agocargo hts-sys} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18latest release August 31, 2021most recent commit 3 years agopypi google-nucleus} Downloads
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1latest release March 03, 2021most recent commit 2 years ago
Popular Science Categories
Physics
Genome
Scientific
Medical
Genomics
Sequencing
Molecule
Evolution
Astronomy
Dna
Related Searches
Variants Vcf
C Variants
Variants Sequencing
C Sequencing
Sequencing Vcf
C Vcf

Get A Weekly Email With Trending Projects For These Categories
No Spam. Unsubscribe easily at any time.
C
Sequencing
Vcf
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.