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Search results for c sequencing
c
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sequencing
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45 search results found
Samtools
⭐
1,496
Tools (written in C using htslib) for manipulating next-generation sequencing data
Soapdenovo2
⭐
197
Next generation sequencing reads de novo assembler.
Wgsim
⭐
188
Reads simulator
Lofreq
⭐
84
LoFreq Star: Sensitive variant calling from sequencing data
Hipstr
⭐
69
Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
Exomedepth
⭐
46
ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.
Aldy
⭐
43
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
Lrsim
⭐
38
10x Genomics Reads Simulator
Vht
⭐
38
vahatraker - a live midi sequencer/tracker for JACK/GTK
Pblat
⭐
37
parallelized blat with multi-threads support
Igor
⭐
35
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
Uniquekmer
⭐
33
Generate unique KMERs for every contig in a FASTA file
Plastid
⭐
32
Position-wise analysis of sequencing and genomics data
Hpg Aligner
⭐
32
HPG Aligner is an ultrafast and highly sensitive Next-Generation Sequencing (NGS) mapper which supoprts both DNA and RNA alignment
Lordfast
⭐
31
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data.
Fastq_utils
⭐
29
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
Seqminer
⭐
28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
Varianttools
⭐
27
software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
Igenomics
⭐
26
The first app for Mobile DNA Sequence Alignment and Analysis
Samstat
⭐
20
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
Clamms
⭐
20
CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
Defq
⭐
20
Ultra-fast Multi-threaded FASTQ Demultiplexing
Crisp
⭐
19
Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
Linkedsv
⭐
18
Ptrimmer
⭐
17
Used to trim off the primer sequence from mutiplex amplicon sequencing
Remix
⭐
15
A library for audio sequencing and mixing.
Deeprepeat
⭐
15
An accurate repeat detection from Nanopore data using deep learning and image techniques
Seastar
⭐
12
SEAStAR is a package of tools supporting the construction of complete analysis pipelines for next-generation (Illumina®, SOLiD™) sequencing data generated from environmental samples.
Seqqs
⭐
11
seqqs is a C program/library for gathering quality statistics from sequencing data
Megapath Nano
⭐
11
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
Libngs
⭐
10
The Nifty GNU Sequence Library
Longgf
⭐
10
A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
Matchclips2
⭐
9
paired end distance, split reads matching, read depth are used to detect and precisely locate structure variations
Lasv
⭐
9
laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datasets
Rhtslib
⭐
9
HTSlib high-throughput sequencing library as an R package
Pcrduplicates
⭐
9
method to estimate PCR duplication rate from high-throughput sequencing data
Breakpointer
⭐
8
Breakpointer is a fast algorithm to locate breakpoints of structural variants from single-end reads produced by next-generation sequencing.
Jiss
⭐
7
JISS - Jack Interactive Sequencing Software
Pecaller
⭐
7
map and call next generation genomic sequencing
Qbrc Somatic Pipeline
⭐
7
QBRC Somatic Mutation Calling Pipeline
Pollux
⭐
6
Error correction of second-generation sequencing technologies.
Wlib
⭐
6
Python Modules for High-throughput Sequencing Data Analysis
Xs
⭐
6
A FASTQ read simulator
Tracetuner
⭐
5
TraceTuner, the DNA sequencing quality value, base calling and trace processing software.
Seqcode
⭐
5
Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
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