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Search results for c vcf
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vcf
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31 search results found
Bioawk
⭐
518
BWK awk modified for biological data
Lancet
⭐
145
Microassembly based somatic variant caller for NGS data
Genozip
⭐
144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Mutscan
⭐
127
Detect and visualize target mutations by scanning FastQ files directly
Gqt
⭐
125
A genotype query interface.
Vcf Validator
⭐
125
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Gtc2vcf
⭐
119
Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
Bgt
⭐
76
Flexible genotype query among 30,000+ samples whole-genome
Mocha
⭐
70
MOsaic CHromosomal Alterations (MoChA) caller
Stix
⭐
38
Structural Variant Index
Verticalize
⭐
32
Simple tool to verticalize text delimited files.
Seqminer
⭐
28
Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
Marginphase
⭐
27
Nekobee
⭐
22
A softsynth recreation of a classic single-oscillator bass monosynth
Hapcut
⭐
21
program for haplotype phasing from sequence reads and related tools
Crisp
⭐
19
Code for multi-sample variant calling from sequence data of pooled or unpooled DNA samples
Raisd
⭐
17
RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
Bcfanno
⭐
12
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
Hpg Variant
⭐
11
A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics
Bam Parser Tutorial
⭐
11
A simple example of parsing BAM files using htslib
Psmcr
⭐
9
R Port of psmc
Emu3bm
⭐
9
Command line application to manage E-Mu EIII sampler bank files
Gsalign
⭐
9
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
Phynder
⭐
8
likelihood calculations over a tree to support ancient DNA Y chr analysis and more
Malva
⭐
7
genotyping by Mapping-free ALternate-allele detection of known VAriants
Rbcf
⭐
7
R Bindings for htslib/bcf
Vcfppr
⭐
6
Rapid processing of VCF/BCF files in R!
Tersect
⭐
6
Command-line utility for conducting fast set theoretical operations and genetic distance estimation on biological sequence variant data.
Phmm Snp Indel Caller
⭐
6
Ios2vcard
⭐
5
Convert iOS Address book directly to vCard file
Xsynth Dssi
⭐
5
A classic-analog (VCOs-VCF-VCA) style software synthesizer DSSI plugin
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1-31 of 31 search results
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