Deep Learning For Genomics
Using deep learning methods on single-cell sequencing data for classification of cell types
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Clairvoyante | 142 | 3 years ago | bsd-3-clause | Python | ||||||
| Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing | ||||||||||
| Mirdeep2 | 120 | 5 months ago | 2 | gpl-3.0 | Perl | |||||
| Discovering known and novel miRNAs from small RNA sequencing data | ||||||||||
| Deepsimulator | 76 | 4 years ago | 8 | C | ||||||
| The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing. | ||||||||||
| Deepnovo | 67 | 3 years ago | 1 | other | Python | |||||
| Protein Identification with Deep Learning | ||||||||||
| Deepsomatic | 45 | 6 months ago | bsd-3-clause | |||||||
| DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data. | ||||||||||
| Deeprepeat | 15 | a year ago | 5 | other | C | |||||
| An accurate repeat detection from Nanopore data using deep learning and image techniques | ||||||||||
| Sars Cov 2_sequencing | 13 | 4 years ago | gpl-3.0 | Jupyter Notebook | ||||||
| SARS-CoV-2 Deep Sequencing | ||||||||||
| Mimsi | 12 | 2 years ago | 1 | March 26, 2021 | gpl-3.0 | Python | ||||
| Microsatellite Instability Classification using Multiple Instance Learning | ||||||||||
| Deep Learning For Genomics | 5 | 7 years ago | Python | |||||||
| Using deep learning methods on single-cell sequencing data for classification of cell types | ||||||||||
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Python
Deep Learning
Types
Genomics
Sequencing