Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Htslib | 762 | 1 | 3 months ago | 11 | June 14, 2023 | 160 | other | C | ||
C library for high-throughput sequencing data formats | ||||||||||
Nucleus | 675 | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | ||
Python and C++ code for reading and writing genomics data. | ||||||||||
Sambamba | 552 | 10 months ago | 1 | October 05, 2022 | 22 | gpl-2.0 | D | |||
Tools for working with SAM/BAM data | ||||||||||
Bioawk | 518 | 2 years ago | 1 | March 03, 2021 | 22 | C | ||||
BWK awk modified for biological data | ||||||||||
Fastqp | 94 | 3 years ago | 12 | mit | Python | |||||
Simple FASTQ quality assessment using Python | ||||||||||
Cljam | 87 | 5 months ago | 37 | May 10, 2019 | 6 | apache-2.0 | Clojure | |||
A DNA Sequence Alignment/Map (SAM) library for Clojure | ||||||||||
Hadoop Bam | 66 | 37 | 33 | 5 years ago | 17 | April 23, 2018 | 40 | mit | Java | |
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework | ||||||||||
Simplesam | 55 | 2 years ago | 8 | mit | Python | |||||
Simple pure Python SAM parser and objects for working with SAM records | ||||||||||
Biod | 43 | 1 | 5 years ago | 5 | June 01, 2019 | 4 | mit | D | ||
A D library for computational biology and bioinformatics | ||||||||||
Ococo | 39 | 5 years ago | 9 | mit | C++ | |||||
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream. |