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27 search results found

C library for high-throughput sequencing data formats

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

Sambamba ⭐ 552

Tools for working with SAM/BAM data

BWK awk modified for biological data

Simple FASTQ quality assessment using Python

A DNA Sequence Alignment/Map (SAM) library for Clojure

Hadoop Bam ⭐ 66

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

Simplesam ⭐ 55

Simple pure Python SAM parser and objects for working with SAM records

A D library for computational biology and bioinformatics

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

Frequently used commands in bioinformatics

Parse and process SAM and BAM formatted files

SQL-like query language for the SAM/BAM file format

SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.

Hts Python ⭐ 18

pythonic wrapper for htslib

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

Bgzfstreams.jl ⭐ 12

Fast5seek ⭐ 11

Subset of fast5 files contained in a fastq, BAM, or SAM file.

Libflagstats ⭐ 11

Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.

Bioparser ⭐ 9

C++ library for parsing several formats in bioinformatics

Tophat Recondition ⭐ 9

Post-processor for TopHat unmapped.bam files making them useable by downstream software.

Ruby Htslib ⭐ 7

HTSlib bindings for Ruby

Python module to manipulate and visualize minimap2's cs tag

Bioinformatics One Liners ⭐ 5

📝 Useful bioinformatics one-line commands.

Bionode Sam ⭐ 5

Node.js wrapper for samtools.

Tools For Cancer Genome Analysis ⭐ 5

Installation and usage for various tools for cancer genomics

Mica Aligner ⭐ 5

MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

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1-27 of 27 search results

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