Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Htslib	762		1	a month ago	11	June 14, 2023	160	other	C
C library for high-throughput sequencing data formats
Nucleus	675		2	3 years ago	18	August 31, 2021	1	other	C++
Python and C++ code for reading and writing genomics data.
Sambamba	552			8 months ago	1	October 05, 2022	22	gpl-2.0	D
Tools for working with SAM/BAM data
Bioawk	518			2 years ago	1	March 03, 2021	22		C
BWK awk modified for biological data
Fastqp	94			3 years ago			12	mit	Python
Simple FASTQ quality assessment using Python
Cljam	87			3 months ago	37	May 10, 2019	6	apache-2.0	Clojure
A DNA Sequence Alignment/Map (SAM) library for Clojure
Hadoop Bam	66	37	33	5 years ago	17	April 23, 2018	40	mit	Java
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
Simplesam	55			2 years ago			8	mit	Python
Simple pure Python SAM parser and objects for working with SAM records
Biod	43	1		4 years ago	5	June 01, 2019	4	mit	D
A D library for computational biology and bioinformatics
Ococo	39			5 years ago			9	mit	C++
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

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Htslib ⭐ 762

C library for high-throughput sequencing data formats

dependent packages 1total releases 11most recent commit a month ago

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

dependent packages 2total releases 18most recent commit 3 years ago

Sambamba ⭐ 552

Tools for working with SAM/BAM data

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Bioawk ⭐ 518

BWK awk modified for biological data

total releases 1most recent commit 2 years ago

Fastqp ⭐ 94

Simple FASTQ quality assessment using Python

most recent commit 3 years ago

Cljam ⭐ 87

A DNA Sequence Alignment/Map (SAM) library for Clojure

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Hadoop Bam ⭐ 66

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

dependent packages 33total releases 17most recent commit 5 years ago

Simplesam ⭐ 55

Simple pure Python SAM parser and objects for working with SAM records

most recent commit 2 years ago

Biod ⭐ 43

A D library for computational biology and bioinformatics

total releases 5most recent commit 4 years ago

Ococo ⭐ 39

Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.

most recent commit 5 years ago

Suggest An Alternative To simplesam

Alternative Project Comparisons

Simplesam vs Htslib

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Simplesam vs Cljam

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Simplesam vs Biod

Simplesam vs Ococo

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