Tools For Cancer Genome Analysis
Installation and usage for various tools for cancer genomics
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Htslib | 762 |  | 1 | 3 months ago | 11 | June 14, 2023 | 160 | other | C | |
| C library for high-throughput sequencing data formats | ||||||||||
| Nucleus | 675 |  | 2 | 3 years ago | 18 | August 31, 2021 | 1 | other | C++ | |
| Python and C++ code for reading and writing genomics data. | ||||||||||
| Sambamba | 552 | 10 months ago | 1 | October 05, 2022 | 22 | gpl-2.0 | D | |||
| Tools for working with SAM/BAM data | ||||||||||
| Bioawk | 518 | 2 years ago | 1 | March 03, 2021 | 22 | C | ||||
| BWK awk modified for biological data | ||||||||||
| Fastqp | 94 | 3 years ago | 12 | mit | Python | |||||
| Simple FASTQ quality assessment using Python | ||||||||||
| Cljam | 87 | 5 months ago | 37 | May 10, 2019 | 6 | apache-2.0 | Clojure | |||
| A DNA Sequence Alignment/Map (SAM) library for Clojure | ||||||||||
| Hadoop Bam | 66 | 37 | 33 | 5 years ago | 17 | April 23, 2018 | 40 | mit | Java | |
| Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework | ||||||||||
| Simplesam | 55 | 2 years ago | 8 | mit | Python | |||||
| Simple pure Python SAM parser and objects for working with SAM records | ||||||||||
| Biod | 43 | 1 | 5 years ago | 5 | June 01, 2019 | 4 | mit | D | ||
| A D library for computational biology and bioinformatics | ||||||||||
| Ococo | 39 | 5 years ago | 9 | mit | C++ | |||||
| Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream. | ||||||||||
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