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Search results for bioinformatics conda
bioinformatics
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conda
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61 search results found
Nextflow
⭐
2,447
A DSL for data-driven computational pipelines
Bioconda Recipes
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1,539
Conda recipes for the bioconda channel.
Sarek
⭐
299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Hicexplorer
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197
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Qubekit
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85
Quantum Mechanical Bespoke Force Field Derivation Toolkit
Plant Seg
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81
A tool for cell instance aware segmentation in densely packed 3D volumetric images
Cell_blast
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74
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.
Tibanna
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68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Catch
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63
A package for designing compact and comprehensive capture probe sets.
Panoptes
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59
Monitor computational workflows in real time
Ultra
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53
Long-read splice alignment with high accuracy
Integron_finder
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50
Bioinformatics tool to find integrons in bacterial genomes
Mantis
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50
A package to annotate protein sequences
Mulled
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49
Mulled - Automatized Containerized Software Repository
Grabseqs
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44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Dchic
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44
dcHiC: Differential compartment analysis for Hi-C datasets
2020plus
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39
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
Oliver
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36
An opinionated Cromwell orchestration manager.
Popdel
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32
Population-wide Deletion Calling
Bioconda.github.io
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32
Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.
Mokapot
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31
Fast and flexible semi-supervised learning for peptide detection in Python
Contact_map
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31
Contact map analysis for biomolecules; based on MDTraj
Wochenende
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30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
Conda Env Builder
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30
Build and maintain multiple custom conda environments all in one place.
Cando
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29
Computational Analysis of Novel Drug Opportunities
Phyloprofile
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26
A phylogenetic profile analysis tool
Pyrpipe
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25
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Paccmann_datasets
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24
pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/
Discover
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23
DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data
Pafpy
⭐
22
A lightweight library for working with PAF (Pairwise mApping Format) files
Assemblycomparator2
⭐
20
🦠📇 Compare prokaryotic genomic assemblies
Echolocator
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20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Kgwasflow
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19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Matam
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18
Mapping-Assisted Targeted-Assembly for Metagenomics
Bactpipe
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17
BACTpipe: An assembly and annotation pipeline for bacterial genomics
Marge
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16
API for HOMER in R for Genomic Analysis using Tidy Conventions
Adapt
⭐
16
A package for designing activity-informed nucleic acid diagnostics for viruses.
Saffrontree
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14
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Cbmpy
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13
CBMPy is a Python based platform for constraint based modelling and analysis.
Srijan Gsoc 2020
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12
Healthcare-Researcher-Connector Package: Federated Learning tool for bridging the gap between Healthcare providers and researchers
Cataloguer
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12
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Reproducible_bioinformatics
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10
Workshop material for BioC Asia 2019
Containers Rules Manuscript
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10
Recommendations to contenarized your bioinformatics software
Tostadas
⭐
10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Riboraptor
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9
Tool for ribo-seq analysis
Isocon
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9
Derives consensus sequences from a set of long noisy reads by clustering and error correction.
Hla Polysolver
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9
Fork of the Polysolver project
Snakemake_rnaseq
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8
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Pydamage
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7
Damage parameter estimation for ancient DNA
Docs
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7
Documentation on St. Jude Cloud.
Albatradis
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7
Comparative TraDIS analysis
Goetia
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6
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
Epigraphdb
⭐
6
Examples on using EpiGraphDB
Reproducible Research Guidelines
⭐
6
Guidelines for accountable and reproducible computational research
Uorf Tools
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6
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
Biojava Notebooks
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6
BioJava examples in Jupyter Notebooks
Tools For Cancer Genome Analysis
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5
Installation and usage for various tools for cancer genomics
Focus
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5
FOCUS: An Agile Profiler for Metagenomic Data
Easy_circos
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5
easy_circos is a simple conda package that aims on rapidly and easily creating minimal circos configurations templates based on input data.
Dambi Hpc Guide
⭐
5
Basic and Advanced usage of High-Performance Computing in Bioinformatics
Related Searches
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Bioinformatics Genome (445)
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