Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Galaxy	1,211	2	23	3 months ago	30	December 08, 2023	2,169	other	Python
Data intensive science for everyone.
Scrna Seq_notes	478			4 months ago				mit	R
A list of scRNA-seq analysis tools
Juicer	313			a year ago			40	mit	Shell
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Sarek	299			3 months ago			180	mit	Nextflow
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Bedops	244			2 years ago	1	March 03, 2021	17	other	C
:microscope: BEDOPS: high-performance genomic feature operations
Flowcraft	234			4 years ago	18	March 02, 2019	39	gpl-3.0	Python
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:
Aws Batch Genomics	181			4 years ago			5	apache-2.0	Python
Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.
Gatk Sv	148			3 months ago			101	bsd-3-clause	Python
A structural variation pipeline for short-read sequencing
Cloud Pipeline	137			3 months ago			840	apache-2.0	Java
Cloud agnostic genomics analysis, scientific computation and storage platform
Viral Ngs	129			4 years ago			60	other	Python
Viral genomics analysis pipelines

Alternatives To Bactpipe

Select To Compare

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30most recent commit 3 months ago

Scrna Seq_notes ⭐ 478

A list of scRNA-seq analysis tools

most recent commit 4 months ago

Juicer ⭐ 313

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

most recent commit a year ago

Sarek ⭐ 299

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

most recent commit 3 months ago

Bedops ⭐ 244

:microscope: BEDOPS: high-performance genomic feature operations

total releases 1most recent commit 2 years ago

Flowcraft ⭐ 234

FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:

total releases 18most recent commit 4 years ago

Aws Batch Genomics ⭐ 181

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

most recent commit 4 years ago

Gatk Sv ⭐ 148

A structural variation pipeline for short-read sequencing

most recent commit 3 months ago

Cloud Pipeline ⭐ 137

Cloud agnostic genomics analysis, scientific computation and storage platform

most recent commit 3 months ago

Viral Ngs ⭐ 129

Viral genomics analysis pipelines

most recent commit 4 years ago

Suggest An Alternative To BACTpipe

Alternative Project Comparisons

Bactpipe vs Galaxy

Bactpipe vs Scrna Seq_notes

Bactpipe vs Juicer

Bactpipe vs Sarek

Bactpipe vs Bedops

Bactpipe vs Flowcraft

Bactpipe vs Aws Batch Genomics

Bactpipe vs Gatk Sv

Bactpipe vs Cloud Pipeline

Bactpipe vs Viral Ngs

Popular Genomics Projects

Biopython ⭐ 3,918

Official git repository for Biopython (originally converted from CVS)

dependent packages 1,373total releases 58latest release February 13, 2023most recent commit 3 months ago

Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Seurat ⭐ 2,025

R toolkit for single cell genomics

dependent packages 2total releases 16latest release November 13, 2022most recent commit 3 months ago

Deeplearning Biology ⭐ 1,846

A list of deep learning implementations in biology

most recent commit a year ago

Minimap2 ⭐ 1,613

A versatile pairwise aligner for genomic and spliced nucleotide sequences

dependent packages 32total releases 27latest release December 26, 2021most recent commit 3 months ago

Popular Pipeline Projects

Nushell ⭐ 28,304

A new type of shell

dependent packages 82total releases 77latest release November 20, 2023most recent commit 3 months ago

Jina ⭐ 19,573

☁️ Build multimodal AI applications with cloud-native stack

dependent packages 16total releases 2,453latest release December 01, 2023most recent commit 3 months ago

Luigi ⭐ 17,046

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

dependent packages 76total releases 80latest release October 05, 2023most recent commit 3 months ago

Vector ⭐ 16,326

A high-performance observability data pipeline.

total releases 3latest release March 13, 2021most recent commit 16 days ago

Argo Cd ⭐ 15,229

Declarative Continuous Deployment for Kubernetes

dependent packages 65total releases 359latest release December 01, 2023most recent commit 3 months ago

Popular Science Categories