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Bioinformatics One Liners

📝 Useful bioinformatics one-line commands.
Stars
5
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No license specified
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Most Recent Commit
2 years ago
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Alternatives To Bioinformatics One Liners
Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Htslib762cargo hts-sys} Downloads1a month ago11June 14, 2023160otherC
C library for high-throughput sequencing data formats
Nucleus675pypi google-nucleus} Downloads23 years ago18August 31, 20211otherC++
Python and C++ code for reading and writing genomics data.
Sambamba552
8 months ago1October 05, 202222gpl-2.0D
Tools for working with SAM/BAM data
Bioawk518
2 years ago1March 03, 202122C
BWK awk modified for biological data
Fastqp94
3 years ago12mitPython
Simple FASTQ quality assessment using Python
Cljam87
3 months ago37May 10, 20196apache-2.0Clojure
A DNA Sequence Alignment/Map (SAM) library for Clojure
Hadoop Bam6637335 years ago17April 23, 201840mitJava
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework
Simplesam55
2 years ago8mitPython
Simple pure Python SAM parser and objects for working with SAM records
Biod43
14 years ago5June 01, 20194mitD
A D library for computational biology and bioinformatics
Ococo39
5 years ago9mitC++
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
Alternatives To Bioinformatics One Liners
Select To Compare
Htslib ⭐ 762
C library for high-throughput sequencing data formats
dependent packages 1total releases 11most recent commit a month agocargo hts-sys} Downloads
Nucleus ⭐ 675
Python and C++ code for reading and writing genomics data.
dependent packages 2total releases 18most recent commit 3 years agopypi google-nucleus} Downloads
Sambamba ⭐ 552
Tools for working with SAM/BAM data
total releases 1most recent commit 8 months ago
Bioawk ⭐ 518
BWK awk modified for biological data
total releases 1most recent commit 2 years ago
Cljam ⭐ 87
A DNA Sequence Alignment/Map (SAM) library for Clojure
total releases 37most recent commit 3 months ago
Biod ⭐ 43
A D library for computational biology and bioinformatics
total releases 5most recent commit 4 years ago


Suggest An Alternative To bioinformatics-one-liners
Alternative Project Comparisons
Bioinformatics One Liners vs Htslib
Bioinformatics One Liners vs Nucleus
Bioinformatics One Liners vs Sambamba
Bioinformatics One Liners vs Bioawk
Bioinformatics One Liners vs Fastqp
Bioinformatics One Liners vs Cljam
Bioinformatics One Liners vs Hadoop Bam
Bioinformatics One Liners vs Simplesam
Bioinformatics One Liners vs Biod
Bioinformatics One Liners vs Ococo
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