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25 search results found

C library for high-throughput sequencing data formats

Sambamba ⭐ 552

Tools for working with SAM/BAM data

Biosyntax ⭐ 184

Syntax highlighting for computational biology

A DNA Sequence Alignment/Map (SAM) library for Clojure

Verifybamid ⭐ 78

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

Simplesam ⭐ 55

Simple pure Python SAM parser and objects for working with SAM records

Bamtocov ⭐ 43

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊

A D library for computational biology and bioinformatics

Hts Nim Tools ⭐ 41

useful command-line tools written to show-case hts-nim

Frequently used commands in bioinformatics

Bioinf Commons ⭐ 30

Bioinformatics library in Kotlin

Biotoolbox ⭐ 27

Tools for querying and analysis of genomic data

Parse and process SAM and BAM formatted files

Gssplayground ⭐ 21

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature

SQL-like query language for the SAM/BAM file format

Hts Python ⭐ 18

pythonic wrapper for htslib

Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform

Efp Seq_browser ⭐ 12

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

Fast5seek ⭐ 11

Subset of fast5 files contained in a fastq, BAM, or SAM file.

HTSlib bindings for Crystal

Managing sequencing data with RDF

Ruby Htslib ⭐ 7

HTSlib bindings for Ruby

A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.

Query language for bioinformatic data

firefox addon : IGV (Integrative Genomics Viewer) control through mozilla Firefox

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1-25 of 25 search results

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