Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for bam
bam
x
50 search results found
Htslib
⭐
762
C library for high-throughput sequencing data formats
Pytorchinsight
⭐
678
a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results
Sambamba
⭐
552
Tools for working with SAM/BAM data
Htsjdk
⭐
271
A Java API for high-throughput sequencing data (HTS) formats.
Biosyntax
⭐
184
Syntax highlighting for computational biology
Dashbuilder
⭐
162
Dashboard composition tooling based on the Uberfire framework
Gtz
⭐
156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Win10
⭐
149
Win 10/11 related research
Genozip
⭐
144
A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too
Viral Ngs
⭐
129
Viral genomics analysis pipelines
Learning_bam_file
⭐
103
Learning the Sequence Alignment/Map format
Cljam
⭐
87
A DNA Sequence Alignment/Map (SAM) library for Clojure
Verifybamid
⭐
78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Dev Standards
⭐
70
https://bamtech.gitbooks.io/dev-standards/
Simplesam
⭐
55
Simple pure Python SAM parser and objects for working with SAM records
Alignoth
⭐
44
Creating alignment plots from bam files
Bamtocov
⭐
43
🏔 coverage extraction from BAM/CRAM files, supporting targets 📊
Biod
⭐
43
A D library for computational biology and bioinformatics
Hts Nim Tools
⭐
41
useful command-line tools written to show-case hts-nim
Fuc
⭐
38
Frequently used commands in bioinformatics
Bioinf Commons
⭐
30
Bioinformatics library in Kotlin
Nest Rabbit Tasks
⭐
27
nest-rabbit-worker is a TaskQueue based upon RabbitMQ for NestJS
Biotoolbox
⭐
27
Tools for querying and analysis of genomic data
Xam.jl
⭐
24
Parse and process SAM and BAM formatted files
Mapache
⭐
23
mapping pipeline for ancient DNA
Cacao
⭐
22
Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
Gssplayground
⭐
21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Samql
⭐
20
SQL-like query language for the SAM/BAM file format
Hts Python
⭐
18
pythonic wrapper for htslib
Phat
⭐
17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Scfetch
⭐
17
Access and Format Single-cell RNA-seq Datasets from Public Resources
Pheniqs
⭐
16
Fast and accurate sequence demultiplexing
Efp Seq_browser
⭐
12
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
Fast5seek
⭐
11
Subset of fast5 files contained in a fastq, BAM, or SAM file.
Megadepth
⭐
11
R interface to megadepth: BigWig and BAM related utilities
Zam
⭐
11
ZAM: Zero parameter Attention Module
Hts.cr
⭐
11
HTSlib bindings for Crystal
Gammit
⭐
10
Functions for using mgcv for mixed models. 📈
Hts Rdf
⭐
9
Managing sequencing data with RDF
Seq Collection
⭐
9
Additive
⭐
7
Bindings for Additive TidyModels
Bamscope
⭐
7
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.
Ruby Htslib
⭐
7
HTSlib bindings for Ruby
Nrutils_dev
⭐
6
Python API for low-level analysis of NR data: Psi4, strain, modeling, lal+pycbc interface when appropriate
Umiscripts
⭐
6
Simple scripts for handling Unique Molecular Indexes in Fastq and Bam files
Infinityenginelibraries
⭐
6
Infinity Engine Libraries for assembler x86
Gql
⭐
5
Query language for bioinformatic data
Rediscover
⭐
5
RNA editing discovery from NGS data.
Bpbio
⭐
5
basepair bio: a single binary with many useful genomics subtools.
Igvfox
⭐
5
firefox addon : IGV (Integrative Genomics Viewer) control through mozilla Firefox
1-50 of 50 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.