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131 search results found

Awesome Deepbio ⭐ 1,467

A curated list of awesome deep learning applications in the field of computational biology

Getting Started With Genomics Tools And Resources ⭐ 991

Unix, R and python tools for genomics and data science

Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science

Ncbi Genome Download ⭐ 784

Scripts to download genomes from the NCBI FTP servers

Biotite ⭐ 515

A comprehensive library for computational molecular biology

Jvarkit ⭐ 440

Java utilities for Bioinformatics

Jbrowse ⭐ 437

Full-featured and stable genome browser built with JavaScript and HTML5.

Histolab ⭐ 315

Library for Digital Pathology Image Processing

Awesome Biology ⭐ 313

Curated (meta)list of resources for Biology.

[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Intermine ⭐ 228

A powerful open source data warehouse system

Learning Bioinformatics At Home ⭐ 226

resources for learning bioinformatics

Pyfastx ⭐ 211

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Deep Rules ⭐ 198

Ten Quick Tips for Deep Learning in Biology

Biosyntax ⭐ 184

Syntax highlighting for computational biology

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

Biosequences.jl ⭐ 141

Biological sequences for the julia language

Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Globalbioticinteractions ⭐ 114

Global Biotic Interactions provides access to existing species interaction datasets

Buddysuite ⭐ 105

Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files

Python_biologist ⭐ 101

Python Programming for Biologists

Biobear ⭐ 100

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Biofsharp ⭐ 94

Open source bioinformatics and computational biology toolbox written in F#.

Tutorial ⭐ 94

Tutorials on machine learning, artificial intelligence, data science with math explanation and reusable code (in python and R)

Race and ethnicity Imputation from Disease history with Deep LEarning

Comparative Genomics Toolkit 3

Biostructures.jl ⭐ 77

A Julia package to read, write and manipulate macromolecular structures (particularly proteins)

Czid Web ⭐ 75

Infectious Disease Sequencing Platform

Mitos.jl ⭐ 64

Mutual Information Tools for protein Sequence analysis in Julia

Awesome Scientific Go ⭐ 62

Go libraries for scientific computing

Guideline For Computational Biology And Bioinformatics ⭐ 60

Caleydo - Visualization for Molecular Biology

Flexidot ⭐ 56

Highly customizable, ambiguity-aware dotplots for visual sequence analyses

Awesome Structural Bioinformatics ⭐ 54

Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

Bioalignments.jl ⭐ 51

Sequence alignment tools

Cath Tools ⭐ 51

Protein structure comparison tools such as SSAP and SNAP

Appliedgenomics2017 ⭐ 49

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

A web application to visualize and edit pathway models

Predict AMPs in (meta)genomes and peptides

Bioblender21 ⭐ 47

Blender plugin to process biological data and molecular work.

Biobroom ⭐ 47

Tidy up computational biology objects

Full_spectrum_bioinformatics ⭐ 47

An open-access bioinformatics text

A library to build and execute typed scientific workflows

A D library for computational biology and bioinformatics

Metasra Pipeline ⭐ 42

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Dockerfiles ⭐ 39

This repository contains Docker files for the images maintained by the Phenotypic Evolution Group at the Institute for Molecular and Cell Biology / Instituto de Investigação e Inovação em Saúde da Universidade do Porto.

Synthetic ⭐ 37

Symbolic Generators for Complex Networks

Geneticvariation.jl ⭐ 33

Datastructures and algorithms for working with genetic variation

Compbioftw ⭐ 30

Essential introductory materials to get into computational biology.

Genomegraphs.jl ⭐ 29

A modern genomics framework for julia

Biosymbols.jl ⭐ 28

Nucleic and amino acid primitive types

Orthoevolution ⭐ 28

An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵

VAPiD: Viral Annotation and Identification Pipeline

Rnacentral Webcode ⭐ 25

RNAcentral website source code

today I learned..

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

🌎 Review materials for bioinformatics, computational biology, and science in general

Bioviewer ⭐ 23

Protein (.pdb, .cif and .fasta) viewer for iPhone, iPad and Mac, using SwiftUI + Metal.

Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.

Ai For Bio ⭐ 21

A free and collaborative space for Machine Learning applied to Biology

Teaching ⭐ 20

Courses & workshops led by members of the Krishnan Lab.

Jaxbd2k Shortcourse ⭐ 19

This repository contains course materials from JAX-BD2K workshop.

Openlab Cli ⭐ 18

Openlab - decentralised bioinformatics services - from the command line.

Pipetaxon ⭐ 18

PipeTaxon exposes the ncbi taxonomy database as a REST API.

🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.

Bioinformatics ⭐ 17

Course materials for Computational Biology and Bioinformatics - BI462

PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.

rbioapi: User-Friendly R Interface to Biologic Web Services' API

Chise.js ⭐ 14

A web application to visualize and edit the pathway models represented by SBGN Process Description Notation

Physiboss ⭐ 14

Multiscale simulation of multi-cellular system

Bioinformatics Conf Vids ⭐ 13

List of conferences with talk videos posted online

Genomicmaps.jl ⭐ 13

Julia package for visualising genomic data

lib310 python package

Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.

Lexicon Mono Seq ⭐ 13

DOM Text Based Multiple Sequence Alignment Library

Explore and analyze biological sequence data

Croissance ⭐ 12

Tool for estimating growth rates from microbial growth curves

Mtat.03.239_bioinformatics ⭐ 12

Teaching materials and tutorials for the bioinformatics course thought at the University of Tartu

High-performance stochastic modeling of DNA loop extrusion interactions

Tissuumapscore ⭐ 12

TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.

Genefinder.jl ⭐ 12

A Gene Finder framework for Julia.

Biocore.jl ⭐ 11

Core types and interfaces for BioJulia packages

PHOsphoproteomic dissecTiOn using Networks

Genomicannotations.jl ⭐ 11

Rescuerepo ⭐ 10

Project for the Bio X AI Hackathon. All about resurrecting old abandonware repos, and reducing the effort to get them up and running again.

Scanomatic ⭐ 10

Readdatastores.jl ⭐ 10

Datastores for reads, not your papa's FASTQ files.

Physcraper ⭐ 10

Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.

Guidescan Cli ⭐ 10

A gRNA database generation tool.

Manipulate and generate figures for trees in Newick format

Awesome Underinvestigated Biology ⭐ 10

Topics in biology that are not researched as much as they should be

Coursera Bioinformatics ⭐ 9

My solution to Bioinformatics Specialization (Finding Hidden Messages in DNA; Genome Sequencing; Comparing Genes, Proteins, and Genomes; Molecular Evolution; Genomic Data Science and Clustering; Finding Mutations in DNA and Proteins; Bioinformatics Capstone: Big Data in Biology)

Biocomp Book ⭐ 9

A repo hosting the combined lectures of a course on Fundamentals of Computational Biology

Origin of Chromosomal Replication Assessment. Python tool for the analysis of circular bacterial DNA sequences in order to find their origin of replication.

Elearningcollection ⭐ 8

A collection of random and not so random online learning materials for biology, computation, and bioinformatics

Lgatto.github.io ⭐ 8

Public_notebooks ⭐ 8

Repository of Jupyter Notebooks created by the Bio2Byte group

Related Searches

Python Bioinformatics (1,510)

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