Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Pyrodigal | 111 | 14 | 3 months ago | 60 | November 27, 2023 | 6 | gpl-3.0 | Cython | ||
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! | ||||||||||
Ltr_finder | 35 | 3 months ago | 3 | mit | C++ | |||||
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. | ||||||||||
Balrog | 30 | 3 years ago | 5 | mit | Jupyter Notebook | |||||
Bacterial Annotation by Learned Representation of Genes | ||||||||||
Dupgen_finder | 17 | 4 years ago | C++ | |||||||
A pipeline used to identify different modes of duplicated gene pairs | ||||||||||
Te_finder | 16 | a year ago | 1 | other | C++ | |||||
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package. | ||||||||||
Multiphate | 14 | 3 years ago | Python | |||||||
Throughput PhATE processing of draft or finished phage genomes | ||||||||||
Alfie | 8 | 4 months ago | gpl-2.0 | Python | ||||||
alfie is the Anonymous Loci Finder! | ||||||||||
Assembly_finder | 6 | 6 months ago | gpl-3.0 | Python | ||||||
search NCBI assemblies | ||||||||||
Mess | 5 | 2 years ago | 1 | gpl-3.0 | Python | |||||
Metagenomic Sequence Simulator |