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11 search results found

⛓ Correct misassemblies using linked AND long reads

Metacache ⭐ 49

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Phigaro is a scalable command-line tool for predicting phages and prophages

Fluentdna ⭐ 43

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.

Speciesprimer ⭐ 26

The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.

⛓️ Construct a Physical Map from Linked Reads

Te_finder ⭐ 16

A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.

Bioinformatics Tools ⭐ 14

Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files

A python project for analysis of codon usage for gene or genome analysis

SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.

A software to detect virome-wide integrations

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1-11 of 11 search results

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