Dupgen_finder
A pipeline used to identify different modes of duplicated gene pairs
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Pyrodigal | 111 |  | 14 | 3 months ago | 60 | November 27, 2023 | 6 | gpl-3.0 | Cython | |
| Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD! | ||||||||||
| Ltr_finder | 35 | 3 months ago | 3 | mit | C++ | |||||
| LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences. | ||||||||||
| Balrog | 30 | 3 years ago | 5 | mit | Jupyter Notebook | |||||
| Bacterial Annotation by Learned Representation of Genes | ||||||||||
| Dupgen_finder | 17 | 4 years ago | C++ | |||||||
| A pipeline used to identify different modes of duplicated gene pairs | ||||||||||
| Te_finder | 16 | a year ago | 1 | other | C++ | |||||
| A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package. | ||||||||||
| Multiphate | 14 | 3 years ago | Python | |||||||
| Throughput PhATE processing of draft or finished phage genomes | ||||||||||
| Alfie | 8 | 4 months ago | gpl-2.0 | Python | ||||||
| alfie is the Anonymous Loci Finder! | ||||||||||
| Assembly_finder | 6 | 6 months ago | gpl-3.0 | Python | ||||||
| search NCBI assemblies | ||||||||||
| Mess | 5 | 2 years ago | 1 | gpl-3.0 | Python | |||||
| Metagenomic Sequence Simulator | ||||||||||
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