Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Biopython	3,918	1,465	1,373	3 months ago	58	February 13, 2023	545	other	Python
Official git repository for Biopython (originally converted from CVS)
Deepvariant	2,978			5 months ago			8	bsd-3-clause	Python
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Gatk	1,576		2	a month ago	46	March 16, 2023	1,299	other	Java
Official code repository for GATK versions 4 and up
Galaxy	1,211	2	23	3 months ago	30	December 08, 2023	2,169	other	Python
Data intensive science for everyone.
Vg	1,022			3 months ago			760	other	C++
tools for working with genome variation graphs
Nucleus	675		2	3 years ago	18	August 31, 2021	1	other	C++
Python and C++ code for reading and writing genomics data.
Pyfaidx	427	103	119	3 months ago	86	September 22, 2023	14	other	Python
Efficient pythonic random access to fasta subsequences
Genomicspapers	350			5 years ago			2
The Leek group guide to genomics papers
Nucleotide Transformer	305			3 months ago			12	other	Python
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Htsjdk	271	170	87	4 months ago	78	October 13, 2023	303		Java
A Java API for high-throughput sequencing data (HTS) formats.

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Biopython ⭐ 3,918

Official git repository for Biopython (originally converted from CVS)

dependent packages 1,373total releases 58most recent commit 3 months ago

Deepvariant ⭐ 2,978

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

most recent commit 5 months ago

Gatk ⭐ 1,576

Official code repository for GATK versions 4 and up

dependent packages 2total releases 46most recent commit a month ago

Galaxy ⭐ 1,211

Data intensive science for everyone.

dependent packages 23total releases 30most recent commit 3 months ago

Vg ⭐ 1,022

tools for working with genome variation graphs

most recent commit 3 months ago

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

dependent packages 2total releases 18most recent commit 3 years ago

Pyfaidx ⭐ 427

Efficient pythonic random access to fasta subsequences

dependent packages 119total releases 86most recent commit 3 months ago

Genomicspapers ⭐ 350

The Leek group guide to genomics papers

most recent commit 5 years ago

Nucleotide Transformer ⭐ 305

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

most recent commit 3 months ago

Htsjdk ⭐ 271

A Java API for high-throughput sequencing data (HTS) formats.

dependent packages 87total releases 78most recent commit 4 months ago

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