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Search results for conda genomics

25 search results found

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Kipoi's model zoo API

Hicexplorer ⭐ 197

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

A package for designing compact and comprehensive capture probe sets.

Mustache ⭐ 50

Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation

An opinionated Cromwell orchestration manager.

Mtbseq_source ⭐ 32

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Wochenende ⭐ 30

Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3

Split Kmer Analysis

Forward-time simulation in Python using fwdpp

Discover ⭐ 23

DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data

SPANDx - Comparative genomics for next-generation haploid sequence data

Kgwasflow ⭐ 19

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Bactpipe ⭐ 17

BACTpipe: An assembly and annotation pipeline for bacterial genomics

A package for designing activity-informed nucleic acid diagnostics for viruses.

Saffrontree ⭐ 14

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Cgat Flow ⭐ 10

cgat-flow repository

Riboraptor ⭐ 9

Tool for ribo-seq analysis

Snakemake_rnaseq ⭐ 8

A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)

Biopyramid ⭐ 7

Framework for developing an online genomics application

Albatradis ⭐ 7

Comparative TraDIS analysis

Streaming de Bruijn and Compact de Bruijn Graph Algorithms

Tutorial_dl_for_genomics ⭐ 6

A short tutorial to using DL and keras for genomics with sequence data.

Pipeline for universal design of target-enrichment probes from various sources of genomic data.

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