Cgat Flow
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
| DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
| Gatk | 1,576 | 2 | 2 months ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
| Official code repository for GATK versions 4 and up | ||||||||||
| Galaxy | 1,211 |  | 2 | 23 | 4 months ago | 30 | December 08, 2023 | 2,169 | other | Python |
| Data intensive science for everyone. | ||||||||||
| Deeptools | 644 | a month ago | 127 | other | Python | |||||
| Tools to process and analyze deep sequencing data. | ||||||||||
| Awesome Omics | 536 | 4 months ago | mit | |||||||
| A collection of awesome things regarding all omics. | ||||||||||
| Jvarkit | 440 | 6 months ago | 52 | other | Java | |||||
| Java utilities for Bioinformatics | ||||||||||
| Juicer | 313 | a year ago | 40 | mit | Shell | |||||
| A One-Click System for Analyzing Loop-Resolution Hi-C Experiments | ||||||||||
| Fgbio | 292 | 4 months ago | 16 | May 16, 2023 | 110 | mit | Scala | |||
| Tools for working with genomic and high throughput sequencing data. | ||||||||||
| Htsjdk | 271 | 170 | 87 | 5 months ago | 78 | October 13, 2023 | 303 | Java | ||
| A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
| Ngless | 141 | a year ago | 5 | September 19, 2022 | 35 | other | Haskell | |||
| NGLess: NGS with less work | ||||||||||
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