Pynnotator
This is a Genome Annotation Framework developed with the goal of annotating VCF files (Exomes or Genomes) from patients with Mendelian Disorders.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Vg | 1,022 | 4 months ago | 760 | other | C++ | |||||
| tools for working with genome variation graphs | ||||||||||
| Hail | 905 |  | 17 | 4 months ago | 146 | October 30, 2023 | 211 | mit | Python | |
| Cloud-native genomic dataframes and batch computing | ||||||||||
| Nanopolish | 496 | 9 months ago | 60 | mit | C++ | |||||
| Signal-level algorithms for MinION data | ||||||||||
| Samplot | 458 | 5 months ago | 3 | October 11, 2020 | 42 | mit | Python | |||
| Plot structural variant signals from many BAMs and CRAMs | ||||||||||
| Vcftools | 415 | a year ago | 100 | lgpl-3.0 | C++ | |||||
| A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project. | ||||||||||
| Snippy | 408 | 7 months ago | 179 | gpl-2.0 | Perl | |||||
| :scissors: :zap: Rapid haploid variant calling and core genome alignment | ||||||||||
| Hap.py | 283 | 2 years ago | 80 | other | C++ | |||||
| Haplotype VCF comparison tools | ||||||||||
| Pygeno | 242 | 1 | 4 years ago | 18 | December 15, 2021 | 5 | apache-2.0 | Python | ||
| Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs | ||||||||||
| Pcgr | 234 | 7 months ago | 13 | mit | R | |||||
| Personal Cancer Genome Reporter (PCGR) | ||||||||||
| Gridss | 212 | a year ago | 58 | other | Java | |||||
| GRIDSS: the Genomic Rearrangement IDentification Software Suite | ||||||||||
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Python
Genome
Vcf