Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Hail	905		17	5 months ago	146	October 30, 2023	211	mit	Python
Cloud-native genomic dataframes and batch computing
Htslib	762		1	3 months ago	11	June 14, 2023	160	other	C
C library for high-throughput sequencing data formats
Nucleus	675		2	3 years ago	18	August 31, 2021	1	other	C++
Python and C++ code for reading and writing genomics data.
Bioawk	518			2 years ago	1	March 03, 2021	22		C
BWK awk modified for biological data
Nanopolish	496			10 months ago			60	mit	C++
Signal-level algorithms for MinION data
Snippy	408			8 months ago			179	gpl-2.0	Perl
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Cyvcf2	345	34	46	5 months ago	90	December 11, 2023	39	mit	Cython
cython + htslib == fast VCF and BCF processing
Vcfanno	334		1	7 months ago	41	November 29, 2022	33	mit	Go
annotate a VCF with other VCFs/BEDs/tabixed files
Survivor	299			7 months ago			66	mit	C++
Toolset for SV simulation, comparison and filtering
Truvari	284			2 months ago	23	August 07, 2023		mit	Python
Structural variant toolkit for VCFs

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Hail ⭐ 905

Cloud-native genomic dataframes and batch computing

dependent packages 17total releases 146most recent commit 5 months ago

Htslib ⭐ 762

C library for high-throughput sequencing data formats

dependent packages 1total releases 11most recent commit 3 months ago

Nucleus ⭐ 675

Python and C++ code for reading and writing genomics data.

dependent packages 2total releases 18most recent commit 3 years ago

Bioawk ⭐ 518

BWK awk modified for biological data

total releases 1most recent commit 2 years ago

Nanopolish ⭐ 496

Signal-level algorithms for MinION data

most recent commit 10 months ago

Snippy ⭐ 408

:scissors: :zap: Rapid haploid variant calling and core genome alignment

most recent commit 8 months ago

Cyvcf2 ⭐ 345

cython + htslib == fast VCF and BCF processing

dependent packages 46total releases 90most recent commit 5 months ago

Vcfanno ⭐ 334

annotate a VCF with other VCFs/BEDs/tabixed files

dependent packages 1total releases 41most recent commit 7 months ago

Survivor ⭐ 299

Toolset for SV simulation, comparison and filtering

most recent commit 7 months ago

Truvari ⭐ 284

Structural variant toolkit for VCFs

total releases 23most recent commit 2 months ago

Suggest An Alternative To hap.py

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