Nf Gwas Pipeline
A Nextflow Genome-Wide Association Study (GWAS) Pipeline
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Svafotate | 32 | 4 months ago | 8 | mit | Python | |||||
| Nf Gwas Pipeline | 17 | a year ago | 2 | gpl-3.0 | R | |||||
| A Nextflow Genome-Wide Association Study (GWAS) Pipeline | ||||||||||
| Parsecnv2 | 14 | 5 months ago | 5 | gpl-3.0 | Perl | |||||
| Parse Copy Number Variation from Array and Sequencing | ||||||||||
| Aperture | 12 | 3 years ago | bsd-3-clause | Java | ||||||
| Alignment-free detection of structural variations and viral integrations in circulating tumor DNA | ||||||||||
| Samplot Ml | 12 | 3 years ago | 3 | mit | Python | |||||
| Dv Trio | 8 | 3 years ago | 2 | bsd-3-clause | Shell | |||||
| dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCFs) created by DeepVariants are then co_called together using GATK[2]. The resultant trio VCF is then post-processing with FamSeq[3] to eliminate mendelian errors. | ||||||||||
| Sentieon Dnascope Ml | 7 | 2 years ago | Shell | |||||||
| Sentieon DNAscope + Machine Learning Model | ||||||||||
| Vcfdbr | 5 | 3 years ago | 1 | mit | R | |||||
| These scripts reformat a VCF into a SQLite database, with R | ||||||||||
| Fine Scale Mutation Spectrum | 5 | 6 years ago | Python | |||||||
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