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16 search results found

Snapatac ⭐ 227

Analysis Pipeline for Single Cell ATAC-seq

GREIN : GEO RNA-seq Experiments Interactive Navigator

Omicselector ⭐ 26

OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.

Nf Gwas Pipeline ⭐ 17

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

Cd4 Csaw ⭐ 15

Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set

Circompara ⭐ 12

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Introduction_to_gwas ⭐ 11

https://filippob.github.io/introduction_to_gwas/

This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-wh genome-sequence-alliance-to-map-spread-of-coronavi

Neuroexpressoanalysis ⭐ 10

Paper at: http://www.eneuro.org/content/4/6/ENEURO.0212-17.2

This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.

Consensustme ⭐ 8

ConsensusTME Gene Sets and R Script

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

Drugfindr ⭐ 5

Repository holding the code for the drugfindR R package

Recenthgt ⭐ 5

A novel bioinformatics pipeline for recent horizontal gene transfer detecting.

Baltica: integrated differential junction usage

Bioinformatics pipeline for nanopore sequencing data

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