Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Deepvariant | 2,978 | 5 months ago | 8 | bsd-3-clause | Python | |||||
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. | ||||||||||
Fastp | 1,602 | 7 months ago | 1 | December 15, 2021 | 309 | mit | C++ | |||
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...) | ||||||||||
Gatk | 1,576 | 2 | 2 months ago | 46 | March 16, 2023 | 1,299 | other | Java | ||
Official code repository for GATK versions 4 and up | ||||||||||
Galaxy | 1,211 | 2 | 23 | 4 months ago | 30 | December 08, 2023 | 2,169 | other | Python | |
Data intensive science for everyone. | ||||||||||
Fgbio | 292 | 4 months ago | 16 | May 16, 2023 | 110 | mit | Scala | |||
Tools for working with genomic and high throughput sequencing data. | ||||||||||
Htsjdk | 271 | 170 | 87 | 5 months ago | 78 | October 13, 2023 | 303 | Java | ||
A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
Sortmerna | 220 | 2 months ago | 42 | gpl-3.0 | C++ | |||||
SortMeRNA: next-generation sequence filtering and alignment tool | ||||||||||
Ugene | 190 | 4 months ago | 6 | gpl-2.0 | C++ | |||||
UGENE is free open-source cross-platform bioinformatics software | ||||||||||
Afterqc | 157 | 6 years ago | 21 | mit | Python | |||||
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data | ||||||||||
Ngstools | 142 | 9 months ago | gpl-3.0 | R | ||||||
Programs to analyse NGS data for population genetics purposes |