Shell Genomics
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Ncbi Genome Download | 784 |  | 2 | 6 | 9 months ago | 25 | July 28, 2023 | 38 | apache-2.0 | Python |
| Scripts to download genomes from the NCBI FTP servers | ||||||||||
| Wgd | 74 | 7 months ago | 17 | gpl-3.0 | Python | |||||
| Python package and CLI for whole-genome duplication related analyses | ||||||||||
| Aegea | 68 | 1 | 4 months ago | 208 | May 26, 2023 | 24 | apache-2.0 | Python | ||
| Amazon Web Services Operator Interface | ||||||||||
| Shell Genomics | 56 | 6 months ago | 27 | other | ||||||
| Introduction to the Command Line for Genomics | ||||||||||
| Jgi Query | 40 | 2 years ago | mpl-2.0 | Python | ||||||
| A simple command-line tool to download data from Joint Genome Institute databases | ||||||||||
| Cosmid | 24 | 10 years ago | 14 | March 03, 2014 | 16 | mit | Python | |||
| Genomics database manager | ||||||||||
| Czid Cli | 13 | 5 months ago | 1 | mit | Go | |||||
| CZID (formerly IDseq) infectious disease command-line interface | ||||||||||
| Sequence Database Curator | 10 | 5 years ago | gpl-3.0 | Python | ||||||
| This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match). | ||||||||||
| Idseq Cli | 7 | 3 years ago | 2 | mit | Python | |||||
| IDseq infectious disease command-line interface | ||||||||||
| Blast Binder | 6 | a year ago | mit | Jupyter Notebook | ||||||
| Repo for running command line-based BLAST in Jupyter environment provided via Binder. | ||||||||||
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