Project Name	Stars	Repos Using This	Packages Using This	Most Recent Commit	Total Releases	Latest Release	Open Issues	License	Language
Ncbi Genome Download	784	2	6	10 months ago	25	July 28, 2023	38	apache-2.0	Python
Scripts to download genomes from the NCBI FTP servers
Wgd	74			7 months ago			17	gpl-3.0	Python
Python package and CLI for whole-genome duplication related analyses
Aegea	68	1		4 months ago	208	May 26, 2023	24	apache-2.0	Python
Amazon Web Services Operator Interface
Shell Genomics	56			7 months ago			27	other
Introduction to the Command Line for Genomics
Jgi Query	40			2 years ago				mpl-2.0	Python
A simple command-line tool to download data from Joint Genome Institute databases
Cosmid	24			10 years ago	14	March 03, 2014	16	mit	Python
Genomics database manager
Czid Cli	13			5 months ago			1	mit	Go
CZID (formerly IDseq) infectious disease command-line interface
Sequence Database Curator	10			5 years ago				gpl-3.0	Python
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Idseq Cli	7			3 years ago			2	mit	Python
IDseq infectious disease command-line interface
Blast Binder	6			a year ago				mit	Jupyter Notebook
Repo for running command line-based BLAST in Jupyter environment provided via Binder.

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Select To Compare

Ncbi Genome Download ⭐ 784

Scripts to download genomes from the NCBI FTP servers

dependent packages 6total releases 25most recent commit 10 months ago

Wgd ⭐ 74

Python package and CLI for whole-genome duplication related analyses

most recent commit 7 months ago

Aegea ⭐ 68

Amazon Web Services Operator Interface

total releases 208most recent commit 4 months ago

Shell Genomics ⭐ 56

Introduction to the Command Line for Genomics

most recent commit 7 months ago

Jgi Query ⭐ 40

A simple command-line tool to download data from Joint Genome Institute databases

most recent commit 2 years ago

Cosmid ⭐ 24

Genomics database manager

total releases 14most recent commit 10 years ago

Czid Cli ⭐ 13

CZID (formerly IDseq) infectious disease command-line interface

most recent commit 5 months ago

Sequence Database Curator ⭐ 10

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

most recent commit 5 years ago

Idseq Cli ⭐ 7

IDseq infectious disease command-line interface

most recent commit 3 years ago

Blast Binder ⭐ 6

Repo for running command line-based BLAST in Jupyter environment provided via Binder.

most recent commit a year ago

Suggest An Alternative To czid-cli

Alternative Project Comparisons

Czid Cli vs Ncbi Genome Download

Czid Cli vs Wgd

Czid Cli vs Aegea

Czid Cli vs Shell Genomics

Czid Cli vs Jgi Query

Czid Cli vs Cosmid

Czid Cli vs Sequence Database Curator

Czid Cli vs Idseq Cli

Czid Cli vs Blast Binder

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