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29 search results found

Getting Started With Genomics Tools And Resources ⭐ 991

Unix, R and python tools for genomics and data science

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Aws Genomics Workflows ⭐ 136

Genomics Workflows on AWS

Genome_updater ⭐ 123

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Wrangling Genomics ⭐ 62

Data Wrangling and Processing for Genomics

Cut Runtools 2.0 ⭐ 62

CUT&RUN and CUT&Tag data processing and analysis

Shell Genomics ⭐ 56

Introduction to the Command Line for Genomics

Teamteri ⭐ 50

Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.

Genomics Secondary Analysis Using Aws Step Functions And Aws Batch ⭐ 38

This solution provides a framework for Next Generation Sequencing (NGS) genomics secondary-analysis pipelines using AWS Step Functions and AWS Batch.

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

Comparative_genomics ⭐ 24

Micro 612 genomics workshop

Pipelines Tools ⭐ 23

Tools for developing and running pipelines with the Genomics API

Bigcomputelabs ⭐ 20

Big Compute Learning Labs

Genetic Map Comparison

Genomics_adventure ⭐ 17

Workshop on Genomics - Genomics Adventure

Cloud Genomics ⭐ 17

Introduction to Cloud Computing for Genomics

Platform for Oncogenomic Reporting and Interpretation (PORI)

Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Prophage_tracer ⭐ 13

Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment

Deepvariant On Spark ⭐ 11

DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

Coimbra Et Al 2021_currbiol ⭐ 9

Code used to analyse WGS data of giraffe in Coimbra et al. 2021 (https://doi.org/10.1016/j.cub.2021.04.033)

uorf4u is a bioinformatics tool for conserved upstream ORF annotation.

Virtual Normal Correction ⭐ 6

Set of commandline tools for analysis of tumor variants without a matching normal. Method described in Genome Research: http://genome.cshlp.org/content/25/9/1382.full

Kas Analyzer ⭐ 6

New computational framework to process and analyze KAS-seq and spKAS-seq data.

Shell Genomics ⭐ 5

https://bioinformatics-core-shared-training.github

Vsc_ngs_workshop ⭐ 5

This is the repository of the Genomics Core High Performance Computing for Genomics workshop.

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