Sigprofilermatrixgenerator
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Sigprofilermatrixgenerator | 91 | | 1 | 10 | 3 months ago | 102 | October 02, 2023 | 5 | bsd-2-clause | Python |
| SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. | ||||||||||
| Tadbit | 89 | a year ago | 58 | gpl-3.0 | Python | |||||
| TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models | ||||||||||
| Sigprofilermatrixgeneratorr | 17 | a year ago | 2 | bsd-2-clause | R | |||||
| R wrapper for utilizing the SigProfilerMatrixGenerator framework | ||||||||||
| Snaptools | 11 | 4 years ago | 22 | September 04, 2019 | 20 | apache-2.0 | Python | |||
| A module for working with snap files in Python | ||||||||||
| Dropseqrunner | 10 | 3 years ago | Python | |||||||
| Lightweight pipeline for processing droplet-based single-cell RNA-seq data | ||||||||||
| Hipiler | 10 | 2 years ago | 12 | mit | JavaScript | |||||
| Visual exploration of large genome interaction matrices with interactive small multiples. | ||||||||||
| Dot2dot | 7 | 2 years ago | 2 | C | ||||||
| Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery | ||||||||||
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