Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Augustus | 237 | 6 months ago | 144 | C++ | ||||||
Genome annotation with AUGUSTUS | ||||||||||
Retroseq | 43 | 7 years ago | 10 | Perl | ||||||
RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps. | ||||||||||
Dot2dot | 7 | 2 years ago | 2 | C | ||||||
Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery | ||||||||||
Brumir | 6 | 2 years ago | 2 | mit | Perl | |||||
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data. | ||||||||||
Forecasd | 5 | 4 years ago | 1 | mit | R | |||||
Forecasting autism gene discovery with machine learning and genome-scale data | ||||||||||
Rediscover | 5 | 5 years ago | 2 | gpl-2.0 | Python | |||||
RNA editing discovery from NGS data. | ||||||||||
Pandelos | 5 | 7 months ago | mit | Java | ||||||
A dictionary-based method for pan-genomic contents discovery. | ||||||||||
Packfinder | 5 | 2 years ago | R | |||||||
A package for the de novo discovery of pack-TYPE transposons |