Augustus
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Augustus | 237 | 4 months ago | 144 | C++ | ||||||
| Genome annotation with AUGUSTUS | ||||||||||
| Retroseq | 43 | 7 years ago | 10 | Perl | ||||||
| RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link below) for usage instructions. Also, there is a page on the wiki describing how the 1000 genomes CEU trio was carried out with the files and parameters used for the various steps. | ||||||||||
| Dot2dot | 7 | 2 years ago | 2 | C | ||||||
| Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery | ||||||||||
| Brumir | 6 | 2 years ago | 2 | mit | Perl | |||||
| BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data. | ||||||||||
| Forecasd | 5 | 4 years ago | 1 | mit | R | |||||
| Forecasting autism gene discovery with machine learning and genome-scale data | ||||||||||
| Rediscover | 5 | 5 years ago | 2 | gpl-2.0 | Python | |||||
| RNA editing discovery from NGS data. | ||||||||||
| Pandelos | 5 | 5 months ago | mit | Java | ||||||
| A dictionary-based method for pan-genomic contents discovery. | ||||||||||
| Packfinder | 5 | 2 years ago | R | |||||||
| A package for the de novo discovery of pack-TYPE transposons | ||||||||||
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