| AlexandrovLab/SigProfilerMatrixGenerator |
91 |
|
1 |
10 |
over 2 years ago |
102 |
October 02, 2023 |
5 |
bsd-2-clause |
Python |
| SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools. |
| 3DGenomes/TADbit |
89 |
|
0 |
0 |
over 3 years ago |
0 |
|
58 |
gpl-3.0 |
Python |
| TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models |
| AlexandrovLab/SigProfilerMatrixGeneratorR |
17 |
|
0 |
0 |
over 3 years ago |
0 |
|
2 |
bsd-2-clause |
R |
| R wrapper for utilizing the SigProfilerMatrixGenerator framework |
| r3fang/SnapTools |
11 |
|
0 |
0 |
over 6 years ago |
22 |
September 04, 2019 |
20 |
apache-2.0 |
Python |
| A module for working with snap files in Python |
| aselewa/dropseqRunner |
10 |
|
0 |
0 |
over 5 years ago |
0 |
|
0 |
|
Python |
| Lightweight pipeline for processing droplet-based single-cell RNA-seq data |
| flekschas/hipiler |
10 |
|
0 |
0 |
over 4 years ago |
0 |
|
12 |
mit |
JavaScript |
| Visual exploration of large genome interaction matrices with interactive small multiples. |
| Gege7177/Dot2dot |
7 |
|
0 |
0 |
over 3 years ago |
0 |
|
2 |
|
C |
| Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery |
