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Hipiler

Visual exploration of large genome interaction matrices with interactive small multiples.
Stars
10
License
mit
Open Issues
12
Most Recent Commit
2 years ago
Programming Language
JavaScript
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Project NameStarsDownloadsRepos Using ThisPackages Using ThisMost Recent CommitTotal ReleasesLatest ReleaseOpen IssuesLicenseLanguage
Sigprofilermatrixgenerator91pypi SigProfilerMatrixGenerator} Downloads1104 months ago102October 02, 20235bsd-2-clausePython
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
Tadbit89
a year ago58gpl-3.0Python
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
Sigprofilermatrixgeneratorr17
a year ago2bsd-2-clauseR
R wrapper for utilizing the SigProfilerMatrixGenerator framework
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4 years ago22September 04, 201920apache-2.0Python
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3 years agoPython
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Hipiler10
2 years ago12mitJavaScript
Visual exploration of large genome interaction matrices with interactive small multiples.
Dot2dot7
2 years ago2C
Dot2dot: Accurate Whole-Genome Tandem Repeats Discovery
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