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The Top 23 Python Sequencing Ngs Open Source Projects

Open source projects categorized as Python Sequencing Ngs
Categories > Science > Ngs
Categories > Science > Sequencing
Deepvariant ⭐ 2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
most recent commit 5 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Afterqc ⭐ 157
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
most recent commit 6 years ago
Seq2science ⭐ 132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
most recent commit 5 months ago
Crispresso ⭐ 110
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
dependent packages 1total releases 51most recent commit 5 years agopypi CRISPResso} Downloads
Ngscheckmate ⭐ 106
Software program for checking sample matching for NGS data
most recent commit 8 months ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
Ngs Pipe ⭐ 87
NGS-pipe: next-generation sequencing pipelines for precision oncology
most recent commit 5 years ago
Mcclintock ⭐ 83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
most recent commit 3 months ago
Catch ⭐ 63
A package for designing compact and comprehensive capture probe sets.
most recent commit 6 months ago
Grabseqs ⭐ 44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
total releases 11most recent commit 4 years ago
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1most recent commit 8 months ago
Ngstools ⭐ 37
Next-Generation Sequencing(NGS) toolkits.
most recent commit 8 years ago
Ngstools ⭐ 23
My own tools code for NGS data analysis (Next Generation Sequencing)
most recent commit 5 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3most recent commit 9 months ago
Chronqc ⭐ 13
Manuscript describing ChronQC is now available online in Bioinformatics
most recent commit 5 years ago
Cava ⭐ 12
CAVA (Clinical Annotation of VAriants)
most recent commit 6 years ago
Ngs Pipeline ⭐ 12
Pipeline for Somatic Variant Calling with WES and WGS data
most recent commit a year ago
Ngsderive ⭐ 10
Forensic analysis tool useful in backwards computing information from next-generation sequencing data.
total releases 24most recent commit 7 months ago
Banzai Microbialgenomics Pipeline ⭐ 10
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
total releases 5most recent commit 7 years ago
Star Seqr ⭐ 9
RNA Fusion Detection and Quantification
total releases 24most recent commit 5 years ago
Iseq ⭐ 9
An integrated analysis toolkit and pipeline for Next-Generation Sequencing (NGS) panel sequencing data
most recent commit 6 years ago
The 2 Most Depended On Python Sequencing Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Crispresso ⭐ 110
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
dependent packages 1total releases 51latest release June 30, 2018most recent commit 5 years agopypi CRISPResso} Downloads
The 10 Latest Releases In Python Sequencing Ngs Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Mapdamage ⭐ 37
mapDamage: tracking and quantifying damage patterns in ancient DNA sequences
total releases 1latest release June 18, 2021most recent commit 8 months ago
Htsinfer ⭐ 7
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
total releases 1latest release June 04, 2020most recent commit 3 months ago
Grabseqs ⭐ 44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
total releases 11latest release January 29, 2020most recent commit 4 years ago
Crispresso ⭐ 110
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
dependent packages 1total releases 51latest release June 30, 2018most recent commit 5 years agopypi CRISPResso} Downloads
Cirrus Ngs ⭐ 5
total releases 1latest release May 25, 2018most recent commit 4 years ago
Star Seqr ⭐ 9
RNA Fusion Detection and Quantification
total releases 24latest release April 06, 2018most recent commit 5 years ago
Seroba ⭐ 14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
total releases 3latest release November 21, 2017most recent commit 9 months ago
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