Crispresso
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Miso Lims | 214 | 3 months ago | 16 | gpl-3.0 | Java | |||||
| MISO: An open-source LIMS for NGS sequencing centres | ||||||||||
| Crispresso | 110 | | 1 | 5 years ago | 51 | June 30, 2018 | 1 | agpl-3.0 | Python | |
| Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data | ||||||||||
| Nanopype | 78 | 2 years ago | 1 | mit | Python | |||||
| Snakemake pipelines for nanopore sequencing data archiving and processing | ||||||||||
| Master_of_pores | 77 | a year ago | mit | Nextflow | ||||||
| Nextflow pipeline for analysis of direct RNA Nanopore reads | ||||||||||
| Ngseasy | 76 | 7 years ago | 9 | gpl-2.0 | Shell | |||||
| Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation) | ||||||||||
| Nanocall | 61 | 7 years ago | 3 | mit | C++ | |||||
| An Oxford Nanopore Basecaller | ||||||||||
| Needlestack | 39 | 4 years ago | 8 | gpl-3.0 | R | |||||
| Multi-sample somatic variant caller | ||||||||||
| Galaxy Rna Workbench | 38 | 5 years ago | 12 | mit | HTML | |||||
| Galaxy RNA workbench | ||||||||||
| Bio Dockers | 32 | 3 months ago | 1 | Dockerfile | ||||||
| :whale: Bio-dockers: dockerized bioinformatic tools | ||||||||||
| Catt | 18 | 6 months ago | 11 | Julia | ||||||
| An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data. | ||||||||||
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