Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Nextflow | 2,447 | 16 | 3 months ago | 250 | November 24, 2023 | 336 | apache-2.0 | Groovy | ||
A DSL for data-driven computational pipelines | ||||||||||
Cromwell | 944 | 3 months ago | 37 | May 18, 2022 | 762 | bsd-3-clause | Scala | |||
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments | ||||||||||
Containers | 621 | 3 months ago | 39 | apache-2.0 | Dockerfile | |||||
Bioinformatics containers | ||||||||||
Redun | 464 | 1 | 5 months ago | 18 | November 12, 2023 | 28 | apache-2.0 | Python | ||
Yet another redundant workflow engine | ||||||||||
Arvados | 354 | 3 months ago | 9 | September 21, 2023 | 13 | other | Go | |||
An open source platform for managing and analyzing biomedical big data | ||||||||||
Plip | 320 | 2 | 1 | 8 months ago | 25 | August 18, 2023 | 34 | gpl-2.0 | Python | |
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294 | ||||||||||
Hicexplorer | 197 | 5 months ago | 107 | gpl-3.0 | Python | |||||
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data. | ||||||||||
Docker Builds | 158 | 3 months ago | 55 | gpl-3.0 | HTML | |||||
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics | ||||||||||
Hts Nim | 151 | 7 months ago | February 01, 2022 | 4 | mit | Nim | ||||
nim wrapper for htslib for parsing genomics data files | ||||||||||
Sarek | 126 | 4 years ago | n,ull | mit | Nextflow | |||||
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing |