Freehic
FreeHi-C pipeline for high fidelity Hi-C data simulation.
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Htsjdk | 271 | 170 | 87 | 4 months ago | 78 | October 13, 2023 | 303 | Java | ||
| A Java API for high-throughput sequencing data (HTS) formats. | ||||||||||
| Hts | 115 | 15 | 71 | 8 months ago | 16 | August 21, 2022 | 7 | bsd-3-clause | Go | |
| biogo high throughput sequencing repository | ||||||||||
| Samstat | 20 | 9 months ago | 4 | other | C | |||||
| SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format. | ||||||||||
| Samql | 20 | 7 months ago | May 30, 2021 | mit | Go | |||||
| SQL-like query language for the SAM/BAM file format | ||||||||||
| Npscarf | 19 | 5 years ago | 5 | |||||||
| Pheniqs | 16 | 2 years ago | 7 | other | C++ | |||||
| Fast and accurate sequence demultiplexing | ||||||||||
| Freehic | 8 | 3 years ago | 5 | mit | Python | |||||
| FreeHi-C pipeline for high fidelity Hi-C data simulation. | ||||||||||
| Ruby Htslib | 7 | 3 months ago | 19 | May 17, 2023 | 4 | mit | Ruby | |||
| HTSlib bindings for Ruby | ||||||||||
| Seqkit | 7 | 2 years ago | mit | Rust | ||||||
| Toolkit for manipulating FASTA and SAM files | ||||||||||
| Cplate | 7 | 8 years ago | 1 | apache-2.0 | Python | |||||
| Digestion template-based deconvolution for chromatin structure inference. | ||||||||||
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